Wall clock time and date at job start Mon Mar 30 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00380 * 2 1 4 4 H 1.48494 * 109.47231 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46953 * 300.00778 * 3 2 1 6 6 H 1.48504 * 109.46787 * 59.99984 * 3 2 1 7 7 C 1.37881 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.53089 * 109.82559 * 300.02386 * 9 7 2 11 11 O 1.43099 * 109.33681 * 296.55246 * 10 9 7 12 12 C 1.43029 * 113.65833 * 301.33686 * 11 10 9 13 13 C 1.53100 * 109.26363 * 58.71222 * 12 11 10 14 14 N 1.46992 * 109.28500 * 303.07326 * 13 12 11 15 15 C 1.47003 * 110.85053 * 181.96613 * 14 13 12 16 16 C 1.53090 * 109.28479 * 178.01131 * 15 14 13 17 17 O 1.43033 * 109.22868 * 56.89460 * 16 15 14 18 18 C 1.43006 * 113.72432 * 301.28147 * 17 16 15 19 19 H 0.97001 * 119.99725 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.49674 * 56.49743 * 10 9 7 21 21 H 1.08992 * 109.49767 * 176.56718 * 10 9 7 22 22 H 1.09002 * 109.51251 * 298.76166 * 12 11 10 23 23 H 1.08997 * 109.51217 * 178.66252 * 12 11 10 24 24 H 1.08995 * 109.49994 * 63.01945 * 13 12 11 25 25 H 1.09000 * 109.50054 * 183.09586 * 13 12 11 26 26 H 1.08998 * 109.50752 * 297.95744 * 15 14 13 27 27 H 1.09001 * 109.50119 * 58.07409 * 15 14 13 28 28 H 1.08998 * 109.51433 * 176.81986 * 16 15 14 29 29 H 1.09001 * 109.51517 * 296.92277 * 16 15 14 30 30 H 1.09003 * 109.49654 * 178.63111 * 18 17 16 31 31 H 1.09003 * 109.49384 * 298.69954 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 0.3678 -2.5887 1.2467 11 8 1.1956 -2.5966 2.4139 12 6 2.1338 -3.6758 2.4449 13 6 3.0364 -3.5959 1.2109 14 7 2.2050 -3.6185 -0.0011 15 6 3.0411 -3.5904 -1.2098 16 6 2.1432 -3.6651 -2.4475 17 8 1.2044 -2.5865 -2.4143 18 6 0.3723 -2.5837 -1.2512 19 1 -0.4850 0.8401 0.0004 20 1 -0.3012 -1.7288 1.2813 21 1 -0.2200 -3.5058 1.2111 22 1 1.5974 -4.6247 2.4429 23 1 2.7422 -3.6035 3.3463 24 1 3.6119 -2.6707 1.2403 25 1 3.7168 -4.4475 1.2020 26 1 3.6164 -2.6649 -1.2330 27 1 3.7212 -4.4421 -1.2018 28 1 2.7550 -3.5876 -3.3463 29 1 1.6079 -4.6146 -2.4522 30 1 -0.2967 -1.7238 -1.2847 31 1 -0.2155 -3.5012 -1.2223 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:12 Heat of formation + Delta-G solvation = -92.865099 kcal Electronic energy + Delta-G solvation = -15830.355067 eV Core-core repulsion = 13304.463452 eV Total energy + Delta-G solvation = -2525.891615 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.10024 -38.50873 -35.71080 -35.12338 -32.09273 -31.10802 -27.39135 -26.71697 -26.45847 -23.85031 -22.22255 -20.84868 -17.96038 -17.39102 -17.36474 -17.05785 -16.28421 -15.96834 -15.67209 -15.46403 -14.95863 -14.83124 -14.43645 -13.45471 -13.00940 -12.80059 -12.64577 -12.64347 -12.49271 -12.24236 -12.21382 -11.57578 -11.34153 -11.05954 -10.61540 -10.43603 -9.88638 -9.09975 -8.04983 -6.20309 1.36571 1.39101 1.46993 2.41329 3.10029 3.14449 3.36435 3.37865 4.16716 4.30067 4.30617 4.44040 4.47099 4.60453 4.61929 4.72435 4.78528 4.78959 4.95904 4.97231 5.12795 5.13470 5.46143 5.49376 5.80375 6.06608 6.25031 6.36746 6.58981 6.62361 6.82062 7.46187 8.91709 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026053 B = 0.017596 C = 0.013861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.474964 B = 1590.908673 C = 2019.556745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.511 4.511 8 H 0.038 0.962 9 C 0.168 3.832 10 C 0.085 3.915 11 O -0.401 6.401 12 C 0.062 3.938 13 C 0.026 3.974 14 N -0.536 5.536 15 C 0.026 3.974 16 C 0.062 3.938 17 O -0.401 6.401 18 C 0.085 3.915 19 H 0.264 0.736 20 H 0.098 0.902 21 H 0.025 0.975 22 H 0.056 0.944 23 H 0.108 0.892 24 H 0.021 0.979 25 H 0.096 0.904 26 H 0.021 0.979 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.902 -7.508 -0.004 8.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.170 4.170 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.078 3.922 10 C 0.007 3.993 11 O -0.320 6.320 12 C -0.015 4.015 13 C -0.102 4.102 14 N -0.262 5.262 15 C -0.102 4.102 16 C -0.015 4.015 17 O -0.320 6.320 18 C 0.007 3.993 19 H 0.074 0.926 20 H 0.116 0.884 21 H 0.043 0.957 22 H 0.075 0.925 23 H 0.126 0.874 24 H 0.039 0.961 25 H 0.115 0.885 26 H 0.040 0.960 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.456 -7.548 -0.006 8.301 hybrid contribution 0.886 1.519 0.003 1.758 sum 4.341 -6.029 -0.003 7.430 Atomic orbital electron populations 1.69707 1.06405 1.27144 1.51482 1.25373 0.95673 1.01437 0.94508 0.85691 0.78673 0.80852 0.77409 1.20475 1.20736 1.20728 1.21351 0.92052 0.91849 1.49752 0.94353 1.19819 0.91381 0.87661 0.93340 1.22556 0.92224 0.99744 0.84744 1.87925 1.51103 1.50683 1.42301 1.22710 0.91112 0.90001 0.97641 1.22626 0.95988 1.00395 0.91206 1.62822 1.17452 1.43749 1.02132 1.22629 0.95960 1.00390 0.91243 1.22709 0.91121 0.90022 0.97601 1.87903 1.50885 1.50582 1.42626 1.22546 0.92150 0.99737 0.84828 0.92638 0.88427 0.95710 0.92547 0.87424 0.96068 0.88536 0.96048 0.88548 0.87429 0.92548 0.88414 0.95768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.92 9.35 21.45 0.20 -49.72 16 2 C 0.03 1.61 5.14 84.66 0.44 2.04 16 3 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.51 -27.64 6.01 25.60 0.15 -27.48 16 8 H 0.04 2.16 5.78 -2.91 -0.02 2.15 16 9 C 0.17 8.11 0.39 2.81 0.00 8.12 16 10 C 0.08 4.10 5.51 72.01 0.40 4.50 16 11 O -0.40 -18.78 10.56 -148.98 -1.57 -20.35 16 12 C 0.06 2.26 7.01 72.02 0.50 2.77 16 13 C 0.03 0.98 5.35 86.32 0.46 1.45 16 14 N -0.54 -22.29 4.66 -849.29 -3.96 -26.24 16 15 C 0.03 0.98 5.35 86.31 0.46 1.44 16 16 C 0.06 2.27 7.01 72.01 0.50 2.77 16 17 O -0.40 -18.78 10.54 -148.98 -1.57 -20.35 16 18 C 0.08 4.10 5.51 72.01 0.40 4.50 16 19 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 20 H 0.10 5.24 6.02 -2.39 -0.01 5.22 16 21 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 24 H 0.02 0.91 6.62 -2.39 -0.02 0.89 16 25 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.02 0.92 6.60 -2.39 -0.02 0.90 16 27 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.10 5.25 6.01 -2.39 -0.01 5.23 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -61.06 237.73 -0.44 -61.50 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.12 Total: 8.28 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 3.32 Total: 0.10 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -3.75 Total: -75.96 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -3.14 Total: -40.71 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -61.06 -0.44 -61.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.368 kcal (2) G-P(sol) polarization free energy of solvation -61.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds