Wall clock time and date at job start Mon Mar 30 2020 02:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 F 1.39897 * 109.47422 * 120.00294 * 2 1 3 5 5 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 6 6 N 1.30253 * 125.61981 * 59.68988 * 5 2 1 7 7 C 1.34478 * 108.70042 * 179.83990 * 6 5 2 8 8 C 1.34332 * 107.66828 * 0.42427 * 7 6 5 9 9 C 1.50704 * 126.44426 * 179.76405 * 8 7 6 10 10 C 1.50699 * 109.46792 * 89.97425 * 9 8 7 11 11 H 1.08000 * 120.00005 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99955 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99888 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00139 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46860 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47225 * 119.99893 * 14 12 10 17 17 H 1.48497 * 109.46623 * 239.99578 * 14 12 10 18 18 O 1.33970 * 125.61850 * 240.00143 * 5 2 1 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.08002 * 126.16559 * 180.16088 * 7 6 5 26 26 H 1.08999 * 109.46866 * 209.97452 * 9 8 7 27 27 H 1.08997 * 109.46752 * 329.97973 * 9 8 7 28 28 H 0.97000 * 119.99483 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6595 1.1422 5 6 2.0324 -0.7103 -1.2306 6 7 1.7814 -0.3653 -2.4612 7 6 2.3994 -1.2293 -3.2858 8 6 3.0385 -2.1331 -2.5248 9 6 3.8613 -3.2960 -3.0165 10 6 5.2954 -2.8628 -3.1806 11 1 5.5823 -1.8472 -2.9512 12 6 6.2410 -3.7631 -3.6234 13 7 5.8917 -5.0000 -3.9022 14 14 8.0188 -3.2264 -3.8261 15 1 8.1501 -1.7962 -3.4488 16 1 8.8881 -4.0519 -2.9496 17 1 8.4312 -3.4045 -5.2415 18 8 2.8058 -1.8042 -1.2389 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 2.3814 -1.2039 -4.3654 26 1 3.8080 -4.1101 -2.2937 27 1 3.4724 -3.6360 -3.9763 28 1 6.5571 -5.6334 -4.2134 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260159454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:28 Heat of formation + Delta-G solvation = -44.744226 kcal Electronic energy + Delta-G solvation = -13956.565663 eV Core-core repulsion = 11309.300420 eV Total energy + Delta-G solvation = -2647.265243 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.76202 -42.61133 -34.96718 -33.81463 -33.31302 -30.66665 -27.58045 -26.93245 -23.81440 -22.73555 -20.82329 -19.97797 -17.32616 -16.72574 -15.90694 -15.51338 -15.04727 -14.97484 -14.43300 -13.35176 -13.02803 -12.62051 -12.57572 -12.42210 -12.28982 -12.11352 -11.61304 -11.36082 -11.13793 -10.91848 -10.84152 -10.64536 -10.27965 -9.80440 -9.65722 -8.58867 -7.91270 -6.20779 -4.26669 2.13626 3.12475 3.22887 3.26649 3.31304 3.37373 4.14914 4.33547 4.42468 4.67296 4.85054 5.15118 5.42122 5.44344 5.58230 5.73227 5.83813 5.90364 6.03754 6.07112 6.29771 6.66893 6.91956 7.21334 7.35305 7.73530 8.02791 8.31251 8.75903 9.38382 10.88917 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.048990 B = 0.007204 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.409906 B = 3885.851453 C = 4019.807653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.231 3.769 3 C -0.166 4.166 4 F -0.194 7.194 5 C 0.106 3.894 6 N -0.461 5.461 7 C -0.085 4.085 8 C 0.036 3.964 9 C 0.089 3.911 10 C -0.523 4.523 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.903 3.097 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.281 1.281 18 O -0.190 6.190 19 H 0.078 0.922 20 H 0.070 0.930 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.181 0.819 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 9.106 5.748 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.212 3.788 3 C -0.224 4.224 4 F -0.175 7.175 5 C -0.101 4.101 6 N -0.192 5.192 7 C -0.223 4.223 8 C -0.018 4.018 9 C 0.052 3.948 10 C -0.561 4.561 11 H 0.079 0.921 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.207 1.207 18 O -0.076 6.076 19 H 0.097 0.903 20 H 0.089 0.911 21 H 0.106 0.894 22 H 0.097 0.903 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.198 0.802 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.675 9.405 5.602 13.968 hybrid contribution 1.510 -0.514 -0.046 1.596 sum -7.165 8.892 5.556 12.700 Atomic orbital electron populations 1.22369 0.91252 1.04280 1.04349 1.18885 0.94656 0.90231 0.75070 1.22376 1.03115 0.92565 1.04301 1.92915 1.90403 1.82941 1.51204 1.25982 0.98554 0.89774 0.95787 1.70079 1.22219 1.27439 0.99420 1.22885 1.03566 0.95175 1.00722 1.25018 0.97362 1.00517 0.78918 1.18106 0.92506 0.87290 0.96917 1.20989 0.91437 0.97670 1.45960 0.92127 1.24982 0.99484 0.94715 0.94822 1.69948 1.34662 1.03697 1.44545 0.86345 0.83794 0.78930 0.77900 1.19574 1.20689 1.20661 1.84462 1.53740 1.38336 1.31038 0.90264 0.91081 0.89393 0.90272 0.90961 0.89406 0.80196 0.94030 0.92264 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.91 37.16 0.33 -1.57 15 2 C 0.23 3.45 1.67 -91.77 -0.15 3.30 15 3 C -0.17 -2.00 8.91 37.16 0.33 -1.67 15 4 F -0.19 -3.22 16.68 2.25 0.04 -3.18 15 5 C 0.11 2.05 6.66 -12.94 -0.09 1.97 15 6 N -0.46 -9.12 11.29 -11.10 -0.13 -9.25 15 7 C -0.09 -1.78 11.80 -17.77 -0.21 -1.99 15 8 C 0.04 0.83 6.58 -35.68 -0.23 0.60 15 9 C 0.09 2.28 5.53 -29.03 -0.16 2.12 15 10 C -0.52 -14.58 9.09 -34.44 -0.31 -14.89 15 11 H 0.06 1.70 7.74 -52.49 -0.41 1.30 15 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 15 13 N -0.89 -25.57 13.29 55.43 0.74 -24.84 15 14 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 15 15 H -0.27 -6.34 7.11 56.52 0.40 -5.93 15 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 18 O -0.19 -4.37 10.62 5.36 0.06 -4.31 15 19 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.09 0.97 8.14 -51.93 -0.42 0.54 15 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.18 3.35 8.06 -52.49 -0.42 2.93 15 26 H 0.04 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.06 1.51 8.14 -51.93 -0.42 1.09 15 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 LS Contribution 256.59 15.07 3.87 3.87 Total: -1.00 -30.25 256.59 -4.39 -34.64 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -3.35 Total: -2.66 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.59 Total: -10.50 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.61 Total: -34.09 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: 0.06 Total: -4.31 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.04 Total: -3.18 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.25 -4.39 -34.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.103 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds