Wall clock time and date at job start Mon Mar 30 2020 02:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 F 1.39897 * 109.47422 * 120.00294 * 2 1 3 5 5 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 6 6 N 1.30255 * 125.62207 * 185.00216 * 5 2 1 7 7 C 1.34476 * 108.70387 * 179.97438 * 6 5 2 8 8 C 1.50699 * 126.16602 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.46893 * 264.99558 * 8 7 6 10 10 H 1.08000 * 120.00350 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00112 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99369 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00000 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47282 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46937 * 120.00274 * 13 11 9 16 16 H 1.48498 * 109.47053 * 239.99918 * 13 11 9 17 17 C 1.34327 * 107.66463 * 359.97438 * 7 6 5 18 18 O 1.33966 * 125.61492 * 4.68931 * 5 2 1 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.08996 * 109.46838 * 24.99343 * 8 7 6 26 26 H 1.09001 * 109.46954 * 144.99724 * 8 7 6 27 27 H 0.97000 * 119.99224 * 179.97438 * 12 11 9 28 28 H 1.08011 * 126.44293 * 180.02562 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6595 1.1422 5 6 2.0324 -0.7103 -1.2306 6 7 3.2797 -0.9721 -1.4993 7 6 3.3410 -1.6144 -2.6792 8 6 4.5928 -2.1001 -3.3634 9 6 5.0573 -1.0646 -4.3548 10 1 4.5014 -0.1468 -4.4776 11 6 6.1914 -1.2893 -5.1061 12 7 6.8675 -2.4076 -4.9577 13 14 6.7668 -0.0061 -6.3356 14 1 5.8382 1.1525 -6.3130 15 1 8.1340 0.4475 -5.9744 16 1 6.7855 -0.5985 -7.6972 17 6 2.0852 -1.7450 -3.1379 18 8 1.2691 -1.1818 -2.2254 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 5.3721 -2.2663 -2.6197 26 1 4.3828 -3.0340 -3.8848 27 1 7.6651 -2.5658 -5.4864 28 1 1.7856 -2.2164 -4.0624 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260244899.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:30 Heat of formation + Delta-G solvation = -41.847041 kcal Electronic energy + Delta-G solvation = -13944.965960 eV Core-core repulsion = 11297.826349 eV Total energy + Delta-G solvation = -2647.139611 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.76278 -42.67467 -34.71671 -34.53577 -32.86365 -30.14138 -27.64078 -27.14005 -23.47916 -23.28653 -20.66388 -19.72280 -17.16205 -16.59967 -16.04304 -15.56924 -15.33206 -15.04565 -14.56874 -13.52495 -13.11237 -12.57399 -12.48038 -12.43333 -12.16730 -12.13969 -11.55338 -11.26832 -11.03903 -10.85110 -10.66668 -10.46126 -10.02156 -9.70204 -9.39595 -8.45644 -8.04969 -6.07393 -4.10772 1.98192 3.01875 3.28327 3.34191 3.38284 3.46606 4.13971 4.38258 4.43144 4.67928 4.76673 5.27860 5.37191 5.47088 5.55826 5.73250 5.82306 5.87195 5.99675 6.09314 6.28467 6.49243 7.11186 7.43259 7.56439 7.88128 8.26034 8.43359 8.92263 9.52629 11.03146 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.049166 B = 0.007131 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.361630 B = 3925.458168 C = 4026.141669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.231 3.769 3 C -0.167 4.167 4 F -0.188 7.188 5 C 0.122 3.878 6 N -0.449 5.449 7 C 0.037 3.963 8 C 0.087 3.913 9 C -0.512 4.512 10 H 0.056 0.944 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.283 1.283 17 C -0.096 4.096 18 O -0.206 6.206 19 H 0.079 0.921 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.263 0.737 28 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 4.938 7.103 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.211 3.789 3 C -0.224 4.224 4 F -0.168 7.168 5 C -0.085 4.085 6 N -0.180 5.180 7 C -0.083 4.083 8 C 0.050 3.950 9 C -0.550 4.550 10 H 0.074 0.926 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.209 1.209 17 C -0.165 4.165 18 O -0.092 6.092 19 H 0.098 0.902 20 H 0.092 0.908 21 H 0.101 0.899 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.735 4.989 7.461 14.773 hybrid contribution -0.031 0.277 -1.249 1.280 sum -11.766 5.266 6.211 14.309 Atomic orbital electron populations 1.22376 0.91833 1.04460 1.04270 1.18726 0.94341 0.90314 0.75482 1.22362 1.04196 0.92080 1.03794 1.92932 1.90502 1.83032 1.50352 1.26171 0.85751 1.03134 0.93466 1.70359 1.18284 1.13671 1.15647 1.22830 0.97725 0.97468 0.90297 1.17787 0.86690 0.96319 0.94252 1.21031 1.10174 1.03397 1.20444 0.92582 1.24988 0.96293 0.95680 0.97285 1.69963 1.17833 1.24419 1.40943 0.86435 0.78698 0.81516 0.80788 1.19754 1.20836 1.20893 1.24845 0.89579 1.05725 0.96313 1.84296 1.39529 1.57797 1.27620 0.90160 0.90790 0.89879 0.90207 0.89844 0.90250 0.94265 0.94367 0.92775 0.76906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.48 37.16 0.32 -1.51 15 2 C 0.23 3.36 1.67 -91.77 -0.15 3.20 15 3 C -0.17 -2.05 8.91 37.16 0.33 -1.71 15 4 F -0.19 -3.05 16.79 2.25 0.04 -3.01 15 5 C 0.12 2.32 6.93 -12.94 -0.09 2.23 15 6 N -0.45 -10.29 11.29 -7.36 -0.08 -10.38 15 7 C 0.04 0.87 6.30 -82.81 -0.52 0.35 15 8 C 0.09 2.33 5.52 -29.04 -0.16 2.17 15 9 C -0.51 -14.60 9.09 -34.44 -0.31 -14.91 15 10 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 12 N -0.89 -26.46 13.29 55.43 0.74 -25.73 15 13 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 15 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 17 C -0.10 -1.89 12.08 29.35 0.35 -1.54 15 18 O -0.21 -3.80 10.18 5.35 0.05 -3.74 15 19 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 21 H 0.08 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.08 1.19 8.14 -51.93 -0.42 0.76 15 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.04 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 28 H 0.21 3.46 8.06 -52.48 -0.42 3.04 15 LS Contribution 256.09 15.07 3.86 3.86 Total: -1.00 -32.09 256.09 -4.10 -36.19 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -3.35 Total: -3.64 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.33 Total: -10.14 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.65 Total: -36.11 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: 0.05 Total: -3.74 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.09 -4.10 -36.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260244899.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.661 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds