Wall clock time and date at job start Mon Mar 30 2020 02:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 F 1.39897 * 109.47422 * 120.00294 * 2 1 3 5 5 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 6 6 N 1.30255 * 125.62207 * 185.00216 * 5 2 1 7 7 C 1.34476 * 108.70387 * 179.97438 * 6 5 2 8 8 C 1.50699 * 126.16602 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.46893 * 264.99558 * 8 7 6 10 10 H 1.08000 * 120.00350 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00112 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99369 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00000 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47282 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46937 * 120.00274 * 13 11 9 16 16 H 1.48498 * 109.47053 * 239.99918 * 13 11 9 17 17 C 1.34327 * 107.66463 * 359.97438 * 7 6 5 18 18 O 1.33966 * 125.61492 * 4.68931 * 5 2 1 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.08996 * 109.46838 * 24.99343 * 8 7 6 26 26 H 1.09001 * 109.46954 * 144.99724 * 8 7 6 27 27 H 0.97000 * 119.99224 * 179.97438 * 12 11 9 28 28 H 1.08011 * 126.44293 * 180.02562 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6595 1.1422 5 6 2.0324 -0.7103 -1.2306 6 7 3.2797 -0.9721 -1.4993 7 6 3.3410 -1.6144 -2.6792 8 6 4.5928 -2.1001 -3.3634 9 6 5.0573 -1.0646 -4.3548 10 1 4.5014 -0.1468 -4.4776 11 6 6.1914 -1.2893 -5.1061 12 7 6.8675 -2.4076 -4.9577 13 14 6.7668 -0.0061 -6.3356 14 1 5.8382 1.1525 -6.3130 15 1 8.1340 0.4475 -5.9744 16 1 6.7855 -0.5985 -7.6972 17 6 2.0852 -1.7450 -3.1379 18 8 1.2691 -1.1818 -2.2254 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 5.3721 -2.2663 -2.6197 26 1 4.3828 -3.0340 -3.8848 27 1 7.6651 -2.5658 -5.4864 28 1 1.7856 -2.2164 -4.0624 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260244899.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:29 Heat of formation + Delta-G solvation = -64.605292 kcal Electronic energy + Delta-G solvation = -13945.952832 eV Core-core repulsion = 11297.826349 eV Total energy + Delta-G solvation = -2648.126483 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.97573 -44.26657 -36.47659 -35.69684 -34.87077 -31.96812 -29.06571 -28.45898 -25.50157 -24.64879 -22.29441 -21.17494 -18.68635 -18.53704 -17.67150 -16.99900 -16.63904 -16.43528 -16.26564 -15.20528 -14.48101 -14.25244 -14.08541 -13.42826 -13.37943 -13.30313 -13.06193 -12.87019 -12.67393 -12.49318 -12.23524 -12.06071 -11.99370 -11.46429 -11.43231 -10.65161 -9.73907 -8.25186 -6.38234 0.44414 1.38570 1.39956 1.52686 1.58751 1.72977 2.39671 2.78674 3.07420 3.37943 3.57550 3.73519 4.12342 4.20098 4.54513 4.59788 4.67631 4.71905 4.88216 4.97727 5.08189 5.17103 5.19795 5.39389 5.41065 5.67017 6.08722 6.70870 6.78972 7.30244 8.85840 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.049166 B = 0.007131 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.361630 B = 3925.458168 C = 4026.141669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.221 3.779 3 C -0.164 4.164 4 F -0.200 7.200 5 C 0.134 3.866 6 N -0.495 5.495 7 C -0.009 4.009 8 C 0.098 3.902 9 C -0.531 4.531 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.972 3.028 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.270 1.270 17 C -0.070 4.070 18 O -0.192 6.192 19 H 0.112 0.888 20 H 0.070 0.930 21 H 0.096 0.904 22 H 0.117 0.883 23 H 0.055 0.945 24 H 0.090 0.910 25 H -0.001 1.001 26 H 0.028 0.972 27 H 0.268 0.732 28 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 6.513 6.818 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.202 3.798 3 C -0.221 4.221 4 F -0.181 7.181 5 C -0.074 4.074 6 N -0.225 5.225 7 C -0.128 4.128 8 C 0.061 3.939 9 C -0.569 4.569 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.567 5.567 13 Si 0.795 3.205 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.195 1.195 17 C -0.140 4.140 18 O -0.078 6.078 19 H 0.131 0.869 20 H 0.089 0.911 21 H 0.114 0.886 22 H 0.135 0.865 23 H 0.074 0.926 24 H 0.109 0.891 25 H 0.018 0.982 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -13.598 6.558 7.182 16.718 hybrid contribution 0.520 -0.235 -1.081 1.222 sum -13.078 6.323 6.100 15.756 Atomic orbital electron populations 1.22409 0.88153 1.05017 1.06578 1.19393 0.96974 0.90422 0.73049 1.22405 1.02494 0.90975 1.06254 1.92909 1.90957 1.83448 1.50742 1.27210 0.84771 1.01228 0.94167 1.70259 1.20820 1.15376 1.16090 1.22443 0.97929 1.00680 0.91798 1.17423 0.87442 0.95913 0.93158 1.21284 1.10792 1.03594 1.21193 0.92991 1.25927 0.96177 0.97865 0.99185 1.70080 1.18331 1.26335 1.41988 0.85303 0.78090 0.78707 0.78350 1.19043 1.20389 1.19524 1.25267 0.88271 1.03705 0.96736 1.84343 1.38788 1.57324 1.27301 0.86897 0.91138 0.88564 0.86467 0.92592 0.89087 0.98225 0.95356 0.92327 0.73577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 8.48 71.98 0.61 -2.28 15 2 C 0.22 5.98 1.67 -11.54 -0.02 5.96 15 3 C -0.16 -3.66 8.91 71.98 0.64 -3.01 15 4 F -0.20 -6.26 16.79 44.97 0.76 -5.50 15 5 C 0.13 4.98 6.93 88.34 0.61 5.60 15 6 N -0.49 -23.14 11.29 -291.98 -3.30 -26.44 15 7 C -0.01 -0.45 6.30 41.26 0.26 -0.20 15 8 C 0.10 5.49 5.52 29.10 0.16 5.65 15 9 C -0.53 -30.93 9.09 25.60 0.23 -30.70 15 10 H 0.05 3.00 7.74 -2.91 -0.02 2.97 15 11 C 0.01 0.41 5.46 84.66 0.46 0.87 15 12 N -0.93 -56.09 13.29 21.45 0.28 -55.81 15 13 Si 0.97 44.38 29.54 68.60 2.03 46.41 15 14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 17 C -0.07 -2.71 12.08 66.93 0.81 -1.90 15 18 O -0.19 -6.71 10.18 -3.76 -0.04 -6.74 15 19 H 0.11 1.29 8.14 -2.39 -0.02 1.27 15 20 H 0.07 1.31 8.14 -2.39 -0.02 1.29 15 21 H 0.10 1.47 8.14 -2.38 -0.02 1.45 15 22 H 0.12 1.73 8.14 -2.39 -0.02 1.71 15 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 15 26 H 0.03 1.59 8.14 -2.39 -0.02 1.57 15 27 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 28 H 0.25 7.48 8.06 -2.91 -0.02 7.46 15 Total: -1.00 -71.31 256.09 4.65 -66.66 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: 1.15 Total: 1.44 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 3.77 Total: -20.01 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.01 Total: -82.25 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.04 Total: -6.74 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.76 Total: -5.50 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -71.31 4.65 -66.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260244899.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.053 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds