Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47433 * 239.99861 * 3 2 1 5 5 H 1.48499 * 109.47480 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47143 * 119.99994 * 3 2 1 7 7 C 1.37877 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00080 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.87126 * 62.39283 * 9 7 2 11 11 C 1.55138 * 110.99321 * 298.55313 * 9 7 2 12 12 C 1.54318 * 103.01962 * 206.25171 * 11 9 7 13 13 N 1.47446 * 107.23317 * 22.28143 * 12 11 9 14 14 C 1.46900 * 111.00102 * 123.25518 * 13 12 11 15 15 C 1.53046 * 113.14861 * 59.87422 * 14 13 12 16 16 S 1.81431 * 89.88784 * 148.14644 * 15 14 13 17 17 C 1.53040 * 113.15063 * 160.24434 * 14 13 12 18 18 C 1.47844 * 108.56507 * 0.99087 * 13 12 11 19 19 H 0.97006 * 119.99542 * 0.02562 * 1 2 3 20 20 H 1.09003 * 110.70811 * 87.86532 * 11 9 7 21 21 H 1.09005 * 110.85390 * 324.70392 * 11 9 7 22 22 H 1.08997 * 109.88989 * 262.87597 * 12 11 9 23 23 H 1.09001 * 109.89206 * 141.68453 * 12 11 9 24 24 H 1.09000 * 112.53127 * 290.06564 * 14 13 12 25 25 H 1.08997 * 113.15080 * 263.40782 * 15 14 13 26 26 H 1.09001 * 113.15053 * 32.89259 * 15 14 13 27 27 H 1.08997 * 113.15476 * 327.12179 * 17 14 13 28 28 H 1.09002 * 113.14277 * 96.56011 * 17 14 13 29 29 H 1.08997 * 110.37646 * 94.73335 * 18 13 12 30 30 H 1.09004 * 110.37323 * 217.07870 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6477 -2.5993 -0.9029 11 6 0.3741 -2.6346 1.2720 12 6 0.2539 -4.1627 1.4504 13 7 1.3921 -4.7761 0.7416 14 6 2.1864 -5.6156 1.6484 15 6 1.3813 -6.7598 2.2689 16 16 2.8753 -7.7888 2.3010 17 6 3.0611 -6.6342 0.9139 18 6 2.2185 -3.6986 0.1570 19 1 -0.4850 0.8401 -0.0004 20 1 -0.6070 -2.1867 1.1135 21 1 0.8675 -2.1837 2.1331 22 1 -0.6838 -4.5137 1.0196 23 1 0.2961 -4.4170 2.5095 24 1 2.7367 -5.0302 2.3850 25 1 1.0006 -6.5260 3.2631 26 1 0.6078 -7.1481 1.6064 27 1 2.6114 -6.9982 -0.0098 28 1 4.0872 -6.2948 0.7727 29 1 3.0365 -3.4404 0.8296 30 1 2.6069 -4.0030 -0.8149 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260378525.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = 21.196549 kcal Electronic energy + Delta-G solvation = -12483.103649 eV Core-core repulsion = 10404.910989 eV Total energy + Delta-G solvation = -2078.192660 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.68364 -35.20766 -32.50815 -28.98924 -28.41337 -26.06960 -24.39218 -21.58873 -19.70918 -19.48977 -16.88250 -16.17598 -15.73805 -14.68690 -14.61646 -14.04909 -13.21498 -12.86455 -12.58526 -12.51178 -12.11101 -11.60500 -11.22824 -11.10270 -10.95474 -10.74786 -10.51961 -10.43479 -9.95133 -9.66264 -9.29120 -8.90557 -8.43645 -7.82419 -7.76812 -6.06804 -4.10628 1.84531 1.99539 3.28699 3.33821 3.36061 4.36087 4.43111 4.52586 5.02978 5.21053 5.27656 5.44641 5.49321 5.63808 5.68617 6.03493 6.08413 6.14415 6.40305 6.45292 6.75862 7.05671 7.10948 7.54185 7.59652 7.61636 7.80363 7.96467 8.36157 8.91096 9.54093 11.02696 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.067978 B = 0.006924 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.800244 B = 4043.156564 C = 4263.368459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.049 3.951 10 H 0.037 0.963 11 C -0.117 4.117 12 C 0.038 3.962 13 N -0.521 5.521 14 C 0.073 3.927 15 C -0.067 4.067 16 S -0.316 6.316 17 C -0.062 4.062 18 C 0.046 3.954 19 H 0.261 0.739 20 H 0.074 0.926 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.038 0.962 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 -9.572 3.059 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.055 0.945 11 C -0.156 4.156 12 C -0.089 4.089 13 N -0.247 5.247 14 C -0.038 4.038 15 C -0.216 4.216 16 S -0.091 6.091 17 C -0.211 4.211 18 C -0.081 4.081 19 H 0.071 0.929 20 H 0.093 0.907 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.057 0.943 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.110 0.890 29 H 0.057 0.943 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.392 -10.884 3.381 11.645 hybrid contribution 0.253 2.207 0.176 2.228 sum 2.646 -8.677 3.557 9.744 Atomic orbital electron populations 1.69950 1.05898 1.26686 1.50066 1.24959 0.94850 0.99051 0.94890 0.86672 0.79622 0.83154 0.78635 1.20200 1.21276 1.20334 1.20996 0.92765 0.90313 1.51509 0.92626 1.19733 0.92105 0.91048 0.94094 0.94451 1.22697 1.02365 0.90588 0.99961 1.22888 0.93589 0.96972 0.95476 1.63898 1.08769 1.22087 1.29907 1.23159 0.93284 0.93681 0.93714 1.24441 0.97696 0.94767 1.04655 1.88800 1.25970 1.53103 1.41239 1.24399 1.04049 0.94037 0.98594 1.23210 0.96133 0.91050 0.97732 0.92923 0.90695 0.93333 0.91550 0.94332 0.90053 0.89067 0.87092 0.87029 0.88981 0.94311 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 12.12 55.43 0.67 -24.20 16 2 C 0.06 1.75 5.34 -17.82 -0.10 1.65 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.78 8.55 -34.44 -0.29 -14.07 16 8 H 0.06 1.46 7.79 -52.48 -0.41 1.05 16 9 C 0.05 1.19 2.96 -89.64 -0.27 0.92 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 11 C -0.12 -2.62 5.64 -24.91 -0.14 -2.76 16 12 C 0.04 0.69 6.43 -2.83 -0.02 0.67 16 13 N -0.52 -9.09 5.10 -235.78 -1.20 -10.29 16 14 C 0.07 1.07 2.56 -67.67 -0.17 0.90 16 15 C -0.07 -0.88 6.66 37.18 0.25 -0.63 16 16 S -0.32 -4.38 24.80 -107.50 -2.67 -7.04 16 17 C -0.06 -0.83 7.60 37.18 0.28 -0.55 16 18 C 0.05 0.91 6.04 -2.30 -0.01 0.90 16 19 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 20 H 0.07 1.81 7.54 -51.93 -0.39 1.42 16 21 H 0.05 1.13 8.04 -51.93 -0.42 0.72 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.04 0.63 7.10 -51.93 -0.37 0.26 16 24 H 0.08 1.27 7.97 -51.93 -0.41 0.85 16 25 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 26 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.78 7.58 -51.93 -0.39 0.39 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 255.94 15.07 3.86 3.86 Total: -1.00 -26.93 255.94 -9.32 -36.24 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.49 Total: -1.42 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.47 Total: -12.96 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: -0.53 Total: -34.50 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -4.38 SS G_CDS: -2.67 Total: -7.04 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.93 -9.32 -36.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378525.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.439 kcal (2) G-P(sol) polarization free energy of solvation -26.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds