Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47433 * 239.99861 * 3 2 1 5 5 H 1.48499 * 109.47480 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47143 * 119.99994 * 3 2 1 7 7 C 1.37877 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00080 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.87126 * 62.39283 * 9 7 2 11 11 C 1.55138 * 110.99321 * 298.55313 * 9 7 2 12 12 C 1.54318 * 103.01962 * 206.25171 * 11 9 7 13 13 N 1.47446 * 107.23317 * 22.28143 * 12 11 9 14 14 C 1.46900 * 111.00102 * 123.25518 * 13 12 11 15 15 C 1.53046 * 113.14861 * 59.87422 * 14 13 12 16 16 S 1.81431 * 89.88784 * 148.14644 * 15 14 13 17 17 C 1.53040 * 113.15063 * 160.24434 * 14 13 12 18 18 C 1.47844 * 108.56507 * 0.99087 * 13 12 11 19 19 H 0.97006 * 119.99542 * 0.02562 * 1 2 3 20 20 H 1.09003 * 110.70811 * 87.86532 * 11 9 7 21 21 H 1.09005 * 110.85390 * 324.70392 * 11 9 7 22 22 H 1.08997 * 109.88989 * 262.87597 * 12 11 9 23 23 H 1.09001 * 109.89206 * 141.68453 * 12 11 9 24 24 H 1.09000 * 112.53127 * 290.06564 * 14 13 12 25 25 H 1.08997 * 113.15080 * 263.40782 * 15 14 13 26 26 H 1.09001 * 113.15053 * 32.89259 * 15 14 13 27 27 H 1.08997 * 113.15476 * 327.12179 * 17 14 13 28 28 H 1.09002 * 113.14277 * 96.56011 * 17 14 13 29 29 H 1.08997 * 110.37646 * 94.73335 * 18 13 12 30 30 H 1.09004 * 110.37323 * 217.07870 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6477 -2.5993 -0.9029 11 6 0.3741 -2.6346 1.2720 12 6 0.2539 -4.1627 1.4504 13 7 1.3921 -4.7761 0.7416 14 6 2.1864 -5.6156 1.6484 15 6 1.3813 -6.7598 2.2689 16 16 2.8753 -7.7888 2.3010 17 6 3.0611 -6.6342 0.9139 18 6 2.2185 -3.6986 0.1570 19 1 -0.4850 0.8401 -0.0004 20 1 -0.6070 -2.1867 1.1135 21 1 0.8675 -2.1837 2.1331 22 1 -0.6838 -4.5137 1.0196 23 1 0.2961 -4.4170 2.5095 24 1 2.7367 -5.0302 2.3850 25 1 1.0006 -6.5260 3.2631 26 1 0.6078 -7.1481 1.6064 27 1 2.6114 -6.9982 -0.0098 28 1 4.0872 -6.2948 0.7727 29 1 3.0365 -3.4404 0.8296 30 1 2.6069 -4.0030 -0.8149 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260378525.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = 5.052081 kcal Electronic energy + Delta-G solvation = -12483.803726 eV Core-core repulsion = 10404.910989 eV Total energy + Delta-G solvation = -2078.892737 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.13613 -36.67221 -34.40488 -30.71622 -29.99324 -27.25957 -26.24101 -22.99272 -21.44881 -20.98903 -18.51092 -17.71115 -16.93635 -16.55499 -16.19079 -15.50279 -14.58393 -14.33259 -14.12413 -13.79413 -13.63345 -13.02534 -12.90513 -12.84844 -12.66467 -12.46417 -12.21576 -11.65125 -11.47526 -11.32181 -11.01037 -10.87502 -10.48053 -9.25902 -8.85667 -8.13148 -6.23453 0.79302 0.92009 1.42970 1.43374 1.51088 2.42822 3.11042 3.19289 3.31374 3.92074 4.03718 4.09811 4.39883 4.46654 4.47837 4.54572 4.67156 4.71011 4.82808 4.94977 5.07268 5.26093 5.36532 5.61391 5.84290 5.91758 6.00547 6.22914 6.36740 6.85957 7.44581 8.95521 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.067978 B = 0.006924 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.800244 B = 4043.156564 C = 4263.368459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.055 0.945 9 C 0.037 3.963 10 H 0.006 0.994 11 C -0.110 4.110 12 C 0.049 3.951 13 N -0.517 5.517 14 C 0.067 3.933 15 C -0.056 4.056 16 S -0.328 6.328 17 C -0.055 4.055 18 C 0.060 3.940 19 H 0.261 0.739 20 H 0.048 0.952 21 H 0.032 0.968 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.037 0.963 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 -10.399 3.557 11.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.018 3.982 10 H 0.024 0.976 11 C -0.149 4.149 12 C -0.078 4.078 13 N -0.242 5.242 14 C -0.044 4.044 15 C -0.205 4.205 16 S -0.104 6.104 17 C -0.203 4.203 18 C -0.067 4.067 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.051 0.949 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.055 0.945 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.085 -11.728 3.883 12.734 hybrid contribution 0.042 2.443 0.013 2.443 sum 3.127 -9.285 3.896 10.544 Atomic orbital electron populations 1.70076 1.07200 1.27325 1.50974 1.25725 0.95645 1.02341 0.94690 0.85694 0.78428 0.79186 0.78851 1.19568 1.21080 1.19722 1.21380 0.93008 0.91765 1.51155 0.92693 1.19699 0.92944 0.92086 0.93461 0.97613 1.22482 1.00248 0.93776 0.98405 1.22775 0.94366 0.93536 0.97160 1.63885 1.08560 1.20967 1.30759 1.23249 0.93810 0.93681 0.93627 1.24397 0.97301 0.93343 1.05418 1.88925 1.26681 1.53213 1.41533 1.24360 1.04278 0.93183 0.98508 1.22943 0.95219 0.90144 0.98395 0.93031 0.93312 0.94928 0.90576 0.91948 0.90468 0.87787 0.86227 0.86393 0.88257 0.94481 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.34 12.12 21.45 0.26 -52.08 16 2 C 0.02 0.83 5.34 84.65 0.45 1.29 16 3 Si 0.95 42.83 29.54 68.60 2.03 44.85 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.53 -28.76 8.55 25.60 0.22 -28.54 16 8 H 0.05 2.88 7.79 -2.91 -0.02 2.86 16 9 C 0.04 1.81 2.96 -10.16 -0.03 1.78 16 10 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 11 C -0.11 -4.96 5.64 31.77 0.18 -4.78 16 12 C 0.05 1.69 6.43 86.65 0.56 2.25 16 13 N -0.52 -17.02 5.10 -899.86 -4.59 -21.61 16 14 C 0.07 1.81 2.56 44.94 0.11 1.92 16 15 C -0.06 -1.30 6.66 72.00 0.48 -0.82 16 16 S -0.33 -8.27 24.80 -56.49 -1.40 -9.67 16 17 C -0.05 -1.32 7.60 72.00 0.55 -0.78 16 18 C 0.06 2.36 6.04 86.77 0.52 2.88 16 19 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 20 H 0.05 2.41 7.54 -2.39 -0.02 2.40 16 21 H 0.03 1.53 8.04 -2.38 -0.02 1.51 16 22 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 23 H 0.06 1.86 7.10 -2.39 -0.02 1.85 16 24 H 0.08 2.22 7.97 -2.39 -0.02 2.20 16 25 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 26 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.04 1.45 7.58 -2.39 -0.02 1.43 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -57.18 255.94 0.44 -56.75 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.10 Total: 6.55 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 3.04 Total: -24.79 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -4.33 Total: -73.70 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.40 Total: -9.67 kcal Total: -57.18 0.44 -56.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378525.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.797 kcal (2) G-P(sol) polarization free energy of solvation -57.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds