Wall clock time and date at job start Mon Mar 30 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48498 * 109.47536 * 269.99992 * 3 2 1 5 5 H 1.48505 * 109.47118 * 30.00411 * 3 2 1 6 6 H 1.48500 * 109.46981 * 149.99886 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09011 * 110.27033 * 302.09207 * 9 7 2 11 11 C 1.54594 * 110.30989 * 64.28222 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.87684 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53039 * 113.15380 * 158.21449 * 14 13 12 16 16 S 1.81491 * 89.86479 * 211.86836 * 15 14 13 17 17 C 1.53042 * 113.15095 * 57.77961 * 14 13 12 18 18 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 19 19 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 20 20 H 1.08999 * 110.72754 * 259.23584 * 11 9 7 21 21 H 1.08999 * 110.72080 * 22.51964 * 11 9 7 22 22 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 23 23 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 24 24 H 1.09006 * 112.49677 * 288.00023 * 14 13 12 25 25 H 1.09004 * 113.14709 * 327.11310 * 15 14 13 26 26 H 1.08998 * 113.15123 * 96.59233 * 15 14 13 27 27 H 1.08993 * 113.15277 * 263.40390 * 17 14 13 28 28 H 1.09001 * 113.14779 * 32.85530 * 17 14 13 29 29 H 1.09002 * 109.91668 * 215.45268 * 18 13 12 30 30 H 1.09002 * 109.91761 * 94.35443 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5914 -2.5552 0.8643 11 6 0.4384 -2.6484 -1.3083 12 6 0.6034 -4.1508 -1.6491 13 7 2.0080 -4.4410 -1.2524 14 6 2.2135 -5.8801 -1.0412 15 6 3.6801 -6.3019 -1.1565 16 16 3.1606 -7.9159 -1.8037 17 6 1.8765 -6.7232 -2.2732 18 6 2.2345 -3.6841 -0.0020 19 1 -0.4851 0.8401 -0.0004 20 1 -0.6104 -2.4039 -1.1404 21 1 0.8593 -2.0254 -2.0975 22 1 -0.0910 -4.7560 -1.0663 23 1 0.4615 -4.3210 -2.7164 24 1 1.7341 -6.2407 -0.1310 25 1 4.2404 -5.7101 -1.8804 26 1 4.1839 -6.3684 -0.1922 27 1 0.8709 -7.1425 -2.2435 28 1 2.0880 -6.2126 -3.2127 29 1 3.2599 -3.3156 0.0284 30 1 2.0446 -4.3245 0.8594 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260378526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:12 Heat of formation + Delta-G solvation = 5.824731 kcal Electronic energy + Delta-G solvation = -12475.061740 eV Core-core repulsion = 10396.202508 eV Total energy + Delta-G solvation = -2078.859232 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06925 -36.71824 -34.37004 -30.73138 -29.97619 -27.24033 -26.20715 -22.97438 -21.32689 -21.09439 -18.55967 -17.85778 -16.80097 -16.55620 -16.22156 -15.29474 -14.81735 -14.21791 -13.92523 -13.85540 -13.71672 -13.03610 -12.96999 -12.62733 -12.59176 -12.48042 -12.16090 -11.63150 -11.55556 -11.33658 -11.04143 -10.79763 -10.47670 -9.32985 -8.85584 -8.11039 -6.18966 0.79294 0.92486 1.43342 1.44557 1.54005 2.45682 3.10203 3.20821 3.30772 3.92650 4.02760 4.13048 4.39244 4.47510 4.48475 4.55605 4.58927 4.68994 4.89176 4.91341 5.06277 5.27727 5.38984 5.56232 5.74297 5.88078 6.13278 6.21896 6.40193 6.89891 7.47881 8.98509 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.068927 B = 0.006926 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.127671 B = 4041.943839 C = 4277.736883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.029 3.971 10 H 0.000 1.000 11 C -0.086 4.086 12 C 0.043 3.957 13 N -0.505 5.505 14 C 0.064 3.936 15 C -0.055 4.055 16 S -0.328 6.328 17 C -0.057 4.057 18 C 0.057 3.943 19 H 0.260 0.740 20 H 0.040 0.960 21 H 0.038 0.962 22 H 0.046 0.954 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -10.755 -3.280 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.073 0.927 9 C 0.010 3.990 10 H 0.019 0.981 11 C -0.125 4.125 12 C -0.084 4.084 13 N -0.231 5.231 14 C -0.047 4.047 15 C -0.204 4.204 16 S -0.104 6.104 17 C -0.205 4.205 18 C -0.071 4.071 19 H 0.069 0.931 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.132 0.868 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.793 -11.910 -3.771 13.056 hybrid contribution -0.614 1.917 0.838 2.180 sum 3.179 -9.993 -2.933 10.889 Atomic orbital electron populations 1.70079 1.07189 1.27171 1.51624 1.25724 0.95635 1.02332 0.95009 0.85646 0.78788 0.79617 0.78155 1.20278 1.21155 1.19230 1.21533 0.92866 0.91632 1.50115 0.92728 1.19500 0.93063 0.92823 0.93616 0.98144 1.22174 0.98555 0.93483 0.98263 1.23248 0.88208 0.96066 1.00860 1.65044 1.23631 1.04850 1.29550 1.23282 0.94914 0.89087 0.97428 1.24368 1.00001 0.90796 1.05212 1.88922 1.32296 1.14354 1.74797 1.24368 1.00714 0.93580 1.01835 1.22842 1.00366 0.94462 0.89451 0.93149 0.94134 0.94300 0.93616 0.89168 0.89782 0.86823 0.88165 0.87494 0.86518 0.91549 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.91 12.63 21.45 0.27 -52.63 16 2 C 0.01 0.63 5.34 84.65 0.45 1.09 16 3 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.52 -28.28 8.37 25.60 0.21 -28.06 16 8 H 0.05 2.91 7.34 -2.91 -0.02 2.89 16 9 C 0.03 1.41 2.87 -10.66 -0.03 1.38 16 10 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 11 C -0.09 -3.87 5.75 31.80 0.18 -3.68 16 12 C 0.04 1.47 5.88 86.59 0.51 1.98 16 13 N -0.51 -16.77 5.22 -896.59 -4.68 -21.45 16 14 C 0.06 1.67 2.74 44.94 0.12 1.79 16 15 C -0.06 -1.34 7.72 72.00 0.56 -0.78 16 16 S -0.33 -8.18 24.80 -56.49 -1.40 -9.58 16 17 C -0.06 -1.28 6.92 72.00 0.50 -0.78 16 18 C 0.06 2.21 6.31 86.44 0.55 2.76 16 19 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 20 H 0.04 1.94 8.12 -2.39 -0.02 1.92 16 21 H 0.04 1.90 7.86 -2.39 -0.02 1.88 16 22 H 0.05 1.44 8.02 -2.39 -0.02 1.42 16 23 H 0.09 2.65 8.11 -2.38 -0.02 2.63 16 24 H 0.08 2.22 7.82 -2.38 -0.02 2.20 16 25 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.07 2.67 7.39 -2.39 -0.02 2.66 16 30 H 0.04 1.28 7.57 -2.39 -0.02 1.26 16 Total: -1.00 -57.90 256.65 0.37 -57.53 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.10 Total: 5.15 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 3.05 Total: -24.32 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -4.41 Total: -74.08 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.40 Total: -9.58 kcal Total: -57.90 0.37 -57.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.353 kcal (2) G-P(sol) polarization free energy of solvation -57.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds