Wall clock time and date at job start Mon Mar 30 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99760 * 2 1 4 4 H 1.48507 * 109.46774 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47202 * 299.99807 * 3 2 1 6 6 H 1.48495 * 109.47228 * 60.00185 * 3 2 1 7 7 C 1.37874 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99488 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00411 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.62434 * 60.39992 * 9 7 2 11 11 C 1.53252 * 109.79343 * 180.88875 * 9 7 2 12 12 N 1.46465 * 109.85692 * 181.80793 * 11 9 7 13 13 C 1.46908 * 111.00005 * 162.23626 * 12 11 9 14 14 C 1.53000 * 117.49789 * 182.02552 * 13 12 11 15 15 C 1.52997 * 117.49626 * 250.65043 * 13 12 11 16 16 C 1.46469 * 112.55817 * 287.34313 * 12 11 9 17 17 C 1.53239 * 109.85980 * 72.66147 * 16 12 11 18 18 S 1.81894 * 109.63325 * 300.00266 * 9 7 2 19 19 H 0.96998 * 120.00193 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.40577 * 61.68881 * 11 9 7 21 21 H 1.08998 * 109.40754 * 301.92824 * 11 9 7 22 22 H 1.09002 * 115.55958 * 36.33214 * 13 12 11 23 23 H 1.08990 * 117.49990 * 359.97438 * 14 13 12 24 24 H 1.09004 * 117.49237 * 214.97670 * 14 13 12 25 25 H 1.08999 * 117.49685 * 145.02139 * 15 13 12 26 26 H 1.08997 * 117.50044 * 359.97438 * 15 13 12 27 27 H 1.09002 * 109.40348 * 192.77689 * 16 12 11 28 28 H 1.08999 * 109.40878 * 312.61762 * 16 12 11 29 29 H 1.09000 * 109.63711 * 57.70186 * 17 16 12 30 30 H 1.09002 * 109.63260 * 178.29011 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6284 -2.5624 -0.8930 11 6 2.2402 -3.6695 0.0212 12 7 1.5104 -4.9386 -0.0222 13 6 2.3949 -6.0412 -0.4223 14 6 1.7719 -7.4316 -0.5620 15 6 2.1832 -6.6486 -1.8105 16 6 0.8332 -5.2409 1.2408 17 6 -0.3806 -4.3215 1.4138 18 16 0.2041 -2.6005 1.4835 19 1 -0.4850 0.8400 0.0004 20 1 2.8345 -3.6245 0.9338 21 1 2.9005 -3.6017 -0.8433 22 1 3.4174 -5.9830 -0.0490 23 1 0.7059 -7.5284 -0.3567 24 1 2.3846 -8.2881 -0.2806 25 1 3.0663 -6.9900 -2.3504 26 1 1.3873 -6.2304 -2.4268 27 1 0.5028 -6.2796 1.2351 28 1 1.5247 -5.0854 2.0689 29 1 -1.0568 -4.4446 0.5678 30 1 -0.8991 -4.5699 2.3398 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260437781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:18 Heat of formation + Delta-G solvation = 26.670044 kcal Electronic energy + Delta-G solvation = -12481.775835 eV Core-core repulsion = 10403.820524 eV Total energy + Delta-G solvation = -2077.955311 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.32742 -34.82860 -33.18848 -30.44794 -28.49007 -24.77389 -22.68428 -21.68362 -20.83135 -19.85270 -16.97385 -15.97173 -15.06183 -14.92818 -14.43731 -14.12074 -13.04031 -12.85550 -12.64295 -12.24892 -12.19262 -11.57835 -11.22097 -11.08945 -10.99145 -10.76991 -10.37130 -10.08492 -9.99592 -9.73304 -9.26810 -8.55888 -8.22851 -7.78828 -6.28467 -5.85890 -4.20902 3.15357 3.32292 3.35752 3.38150 3.97932 4.15680 4.29961 4.39075 5.10921 5.16443 5.33115 5.38431 5.53541 5.74763 5.80215 5.91644 5.99293 6.10260 6.16987 6.25418 6.34921 6.37643 6.59099 6.75979 7.32391 7.61188 7.63736 7.78996 8.08973 8.73790 9.36528 10.88176 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.044610 B = 0.009432 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.505325 B = 2967.913543 C = 3392.200090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.070 3.930 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.500 4.500 8 H 0.069 0.931 9 C 0.122 3.878 10 H 0.048 0.952 11 C 0.072 3.928 12 N -0.525 5.525 13 C 0.014 3.986 14 C -0.180 4.180 15 C -0.165 4.165 16 C 0.067 3.933 17 C -0.101 4.101 18 S -0.304 6.304 19 H 0.265 0.735 20 H 0.034 0.966 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -10.278 -0.416 10.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.544 4.544 8 H 0.087 0.913 9 C -0.004 4.004 10 H 0.066 0.934 11 C -0.057 4.057 12 N -0.250 5.250 13 C -0.095 4.095 14 C -0.218 4.218 15 C -0.203 4.203 16 C -0.062 4.062 17 C -0.249 4.249 18 S -0.074 6.074 19 H 0.075 0.925 20 H 0.052 0.948 21 H 0.089 0.911 22 H 0.102 0.898 23 H 0.115 0.885 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.117 -9.366 0.051 9.603 hybrid contribution 1.168 -0.085 -0.215 1.191 sum 3.286 -9.452 -0.165 10.008 Atomic orbital electron populations 1.70082 1.05892 1.26910 1.44176 1.25134 0.94999 0.99702 0.94180 0.86412 0.80175 0.83022 0.77814 1.19445 1.20689 1.20662 1.20856 0.93116 0.89012 1.51436 0.91324 1.20751 0.93562 0.93722 0.92319 0.93369 1.22418 0.95860 0.87375 1.00001 1.61017 1.30648 1.01779 1.31535 1.22347 0.95677 0.90789 1.00708 1.23020 1.01530 0.93952 1.03268 1.23035 1.03160 1.03049 0.91038 1.22142 0.95572 0.98400 0.90068 1.23355 0.98988 0.99342 1.03250 1.87634 1.67064 1.09587 1.43066 0.92485 0.94778 0.91145 0.89802 0.88544 0.89164 0.89187 0.88239 0.91628 0.94529 0.91035 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.03 12.19 55.43 0.68 -23.35 16 2 C 0.07 1.92 5.28 -17.82 -0.09 1.83 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.50 -13.63 8.59 -34.44 -0.30 -13.92 16 8 H 0.07 1.81 7.75 -52.48 -0.41 1.40 16 9 C 0.12 3.12 2.66 -27.75 -0.07 3.05 16 10 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 11 C 0.07 1.56 4.64 -3.93 -0.02 1.54 16 12 N -0.53 -9.91 4.54 -227.06 -1.03 -10.94 16 13 C 0.01 0.21 5.18 -67.71 -0.35 -0.14 16 14 C -0.18 -2.27 9.53 -26.73 -0.25 -2.53 16 15 C -0.16 -2.21 10.46 -26.73 -0.28 -2.49 16 16 C 0.07 1.21 5.36 -3.93 -0.02 1.19 16 17 C -0.10 -2.02 6.69 37.28 0.25 -1.77 16 18 S -0.30 -7.68 20.40 -107.50 -2.19 -9.88 16 19 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 20 H 0.03 0.75 7.91 -51.93 -0.41 0.34 16 21 H 0.07 1.46 7.96 -51.93 -0.41 1.05 16 22 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 23 H 0.10 1.25 7.32 -51.93 -0.38 0.87 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.07 1.02 6.38 -51.93 -0.33 0.68 16 28 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 256.88 15.07 3.87 3.87 Total: -1.00 -28.83 256.88 -9.28 -38.11 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.45 Total: -0.44 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.14 Total: -13.24 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.36 Total: -34.29 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -2.19 Total: -9.88 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.83 -9.28 -38.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.779 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds