Wall clock time and date at job start Mon Mar 30 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99760 * 2 1 4 4 H 1.48507 * 109.46774 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47202 * 299.99807 * 3 2 1 6 6 H 1.48495 * 109.47228 * 60.00185 * 3 2 1 7 7 C 1.37874 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99488 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00411 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.62434 * 60.39992 * 9 7 2 11 11 C 1.53252 * 109.79343 * 180.88875 * 9 7 2 12 12 N 1.46465 * 109.85692 * 181.80793 * 11 9 7 13 13 C 1.46908 * 111.00005 * 162.23626 * 12 11 9 14 14 C 1.53000 * 117.49789 * 182.02552 * 13 12 11 15 15 C 1.52997 * 117.49626 * 250.65043 * 13 12 11 16 16 C 1.46469 * 112.55817 * 287.34313 * 12 11 9 17 17 C 1.53239 * 109.85980 * 72.66147 * 16 12 11 18 18 S 1.81894 * 109.63325 * 300.00266 * 9 7 2 19 19 H 0.96998 * 120.00193 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.40577 * 61.68881 * 11 9 7 21 21 H 1.08998 * 109.40754 * 301.92824 * 11 9 7 22 22 H 1.09002 * 115.55958 * 36.33214 * 13 12 11 23 23 H 1.08990 * 117.49990 * 359.97438 * 14 13 12 24 24 H 1.09004 * 117.49237 * 214.97670 * 14 13 12 25 25 H 1.08999 * 117.49685 * 145.02139 * 15 13 12 26 26 H 1.08997 * 117.50044 * 359.97438 * 15 13 12 27 27 H 1.09002 * 109.40348 * 192.77689 * 16 12 11 28 28 H 1.08999 * 109.40878 * 312.61762 * 16 12 11 29 29 H 1.09000 * 109.63711 * 57.70186 * 17 16 12 30 30 H 1.09002 * 109.63260 * 178.29011 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6284 -2.5624 -0.8930 11 6 2.2402 -3.6695 0.0212 12 7 1.5104 -4.9386 -0.0222 13 6 2.3949 -6.0412 -0.4223 14 6 1.7719 -7.4316 -0.5620 15 6 2.1832 -6.6486 -1.8105 16 6 0.8332 -5.2409 1.2408 17 6 -0.3806 -4.3215 1.4138 18 16 0.2041 -2.6005 1.4835 19 1 -0.4850 0.8400 0.0004 20 1 2.8345 -3.6245 0.9338 21 1 2.9005 -3.6017 -0.8433 22 1 3.4174 -5.9830 -0.0490 23 1 0.7059 -7.5284 -0.3567 24 1 2.3846 -8.2881 -0.2806 25 1 3.0663 -6.9900 -2.3504 26 1 1.3873 -6.2304 -2.4268 27 1 0.5028 -6.2796 1.2351 28 1 1.5247 -5.0854 2.0689 29 1 -1.0568 -4.4446 0.5678 30 1 -0.8991 -4.5699 2.3398 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260437781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:18 Heat of formation + Delta-G solvation = 8.955435 kcal Electronic energy + Delta-G solvation = -12482.543998 eV Core-core repulsion = 10403.820524 eV Total energy + Delta-G solvation = -2078.723474 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.67027 -36.27857 -35.08896 -32.24183 -30.18731 -26.67294 -24.09649 -22.85403 -22.53039 -21.27449 -18.82748 -17.61547 -16.73942 -16.61236 -16.04238 -15.56829 -14.75077 -14.58540 -14.21092 -14.03930 -13.79407 -13.05130 -12.87486 -12.81391 -12.52556 -12.28681 -11.89891 -11.87559 -11.36406 -11.27477 -10.99251 -10.57710 -10.15060 -9.24662 -8.34494 -7.89339 -6.36073 1.30607 1.41450 1.54221 1.55938 2.33153 2.42787 2.81360 2.93186 3.24426 4.01694 4.06162 4.09868 4.18356 4.29282 4.45833 4.53187 4.54948 4.71648 4.82344 4.85338 4.94315 5.00892 5.10157 5.31898 5.34980 5.60762 5.91796 6.19754 6.25496 6.64373 7.26146 8.81612 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.044610 B = 0.009432 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.505325 B = 2967.913543 C = 3392.200090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.021 3.979 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.524 4.524 8 H 0.071 0.929 9 C 0.129 3.871 10 H 0.007 0.993 11 C 0.089 3.911 12 N -0.537 5.537 13 C -0.014 4.014 14 C -0.155 4.155 15 C -0.163 4.163 16 C 0.072 3.928 17 C -0.082 4.082 18 S -0.366 6.366 19 H 0.265 0.735 20 H 0.027 0.973 21 H 0.073 0.927 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.119 0.881 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -11.960 -0.296 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.186 4.186 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.089 0.911 9 C 0.003 3.997 10 H 0.025 0.975 11 C -0.041 4.041 12 N -0.262 5.262 13 C -0.122 4.122 14 C -0.192 4.192 15 C -0.201 4.201 16 C -0.057 4.057 17 C -0.230 4.230 18 S -0.137 6.137 19 H 0.075 0.925 20 H 0.045 0.955 21 H 0.091 0.909 22 H 0.109 0.891 23 H 0.114 0.886 24 H 0.137 0.863 25 H 0.131 0.869 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.047 -11.064 0.157 11.477 hybrid contribution 0.817 0.314 -0.263 0.914 sum 3.864 -10.750 -0.106 11.423 Atomic orbital electron populations 1.70220 1.07460 1.27683 1.45425 1.25969 0.95779 1.03201 0.93602 0.85359 0.79225 0.78514 0.77772 1.18398 1.19941 1.20711 1.21196 0.93438 0.90202 1.51827 0.91110 1.20553 0.93506 0.95315 0.90330 0.97464 1.22065 0.94652 0.87691 0.99665 1.60922 1.31410 1.01868 1.31970 1.22467 0.95782 0.91275 1.02715 1.23125 1.01788 0.92911 1.01349 1.23097 1.03656 1.02686 0.90619 1.22119 0.94373 0.99485 0.89699 1.23404 0.99962 0.95342 1.04322 1.87584 1.67999 1.15315 1.42773 0.92544 0.95457 0.90904 0.89145 0.88590 0.86272 0.86915 0.89841 0.88060 0.94884 0.91644 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.57 12.19 21.45 0.26 -51.31 16 2 C 0.02 1.17 5.28 84.65 0.45 1.62 16 3 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.52 -29.20 8.59 25.60 0.22 -28.98 16 8 H 0.07 3.79 7.75 -2.91 -0.02 3.77 16 9 C 0.13 6.79 2.66 29.93 0.08 6.87 16 10 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 11 C 0.09 3.84 4.64 86.47 0.40 4.24 16 12 N -0.54 -19.61 4.54 -872.28 -3.96 -23.57 16 13 C -0.01 -0.40 5.18 44.91 0.23 -0.17 16 14 C -0.15 -3.28 9.53 30.60 0.29 -2.99 16 15 C -0.16 -3.92 10.46 30.60 0.32 -3.60 16 16 C 0.07 2.44 5.36 86.47 0.46 2.90 16 17 C -0.08 -3.18 6.69 72.06 0.48 -2.69 16 18 S -0.37 -18.85 20.40 -56.49 -1.15 -20.00 16 19 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 20 H 0.03 1.20 7.91 -2.39 -0.02 1.18 16 21 H 0.07 3.05 7.96 -2.39 -0.02 3.03 16 22 H 0.09 2.46 8.10 -2.39 -0.02 2.44 16 23 H 0.10 2.08 7.32 -2.39 -0.02 2.07 16 24 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 27 H 0.10 2.75 6.38 -2.39 -0.02 2.73 16 28 H 0.03 1.16 7.91 -2.39 -0.02 1.14 16 29 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -63.60 256.88 1.21 -62.38 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.10 Total: 9.85 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 2.94 Total: -22.80 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -3.70 Total: -74.88 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -18.85 SS G_CDS: -1.15 Total: -20.00 kcal Total: -63.60 1.21 -62.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.337 kcal (2) G-P(sol) polarization free energy of solvation -63.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds