Wall clock time and date at job start Mon Mar 30 2020 02:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.49787 * 111.00229 * 2 1 4 4 C 1.55512 * 106.72121 * 215.24782 * 3 2 1 5 5 H 1.09003 * 110.75730 * 236.90935 * 4 3 2 6 6 C 1.50698 * 110.62132 * 113.97951 * 4 3 2 7 7 H 1.08002 * 119.99594 * 309.39259 * 6 4 3 8 8 C 1.37876 * 120.00775 * 129.38942 * 6 4 3 9 9 N 1.31519 * 119.99447 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 120.00593 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46847 * 60.00009 * 10 8 6 12 12 H 1.48494 * 109.47085 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46781 * 300.00217 * 10 8 6 14 14 C 1.52119 * 103.49317 * 355.47535 * 4 3 2 15 15 H 1.08995 * 111.11111 * 273.41260 * 14 4 3 16 16 C 1.52831 * 119.19106 * 143.35652 * 14 4 3 17 17 S 1.84694 * 100.45415 * 201.72434 * 16 14 4 18 18 C 1.84370 * 97.07626 * 24.32199 * 17 16 14 19 19 C 1.44897 * 110.99959 * 245.60280 * 2 1 3 20 20 H 1.09003 * 107.91973 * 51.92955 * 19 2 1 21 21 H 1.08993 * 109.47731 * 174.39549 * 1 2 3 22 22 H 1.09000 * 109.47012 * 294.39543 * 1 2 3 23 23 H 1.09009 * 109.47073 * 54.39110 * 1 2 3 24 24 H 1.09004 * 110.01041 * 334.56004 * 3 2 1 25 25 H 1.09005 * 110.01532 * 95.93209 * 3 2 1 26 26 H 0.96998 * 120.00164 * 179.97438 * 9 8 6 27 27 H 1.08997 * 111.21523 * 83.92731 * 16 14 4 28 28 H 1.09005 * 111.25900 * 319.54290 * 16 14 4 29 29 H 1.09001 * 110.74955 * 248.00908 * 18 17 16 30 30 H 1.09003 * 110.91122 * 124.72465 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0059 1.3984 0.0000 4 6 3.3017 1.3801 -0.8595 5 1 4.1527 1.7434 -0.2833 6 6 3.1207 2.2012 -2.1101 7 1 2.2604 2.0392 -2.7426 8 6 4.0532 3.1594 -2.4469 9 7 5.1010 3.3563 -1.6769 10 14 3.8284 4.1776 -3.9968 11 1 2.5526 4.9329 -3.9120 12 1 4.9598 5.1298 -4.1319 13 1 3.7942 3.2792 -5.1786 14 6 3.4777 -0.0908 -1.2053 15 1 4.0279 -0.6146 -0.4238 16 6 4.0161 -0.4733 -2.5835 17 16 3.3979 -2.2087 -2.7149 18 6 1.9860 -2.0364 -1.5419 19 6 1.9883 -0.5588 -1.2319 20 1 1.5114 -0.0392 -2.0631 21 1 -0.3634 -1.0226 -0.1004 22 1 -0.3633 0.4245 0.9359 23 1 -0.3634 0.5984 -0.8356 24 1 1.2761 2.0781 -0.4400 25 1 2.2384 1.7087 1.0187 26 1 5.7573 4.0301 -1.9140 27 1 5.1053 -0.4399 -2.6046 28 1 3.5896 0.1575 -3.3635 29 1 2.1608 -2.6208 -0.6386 30 1 1.0490 -2.3304 -2.0150 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676564.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:24 Heat of formation + Delta-G solvation = 8.052051 kcal Electronic energy + Delta-G solvation = -12933.121019 eV Core-core repulsion = 10854.358371 eV Total energy + Delta-G solvation = -2078.762648 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19512 -33.52554 -32.56331 -30.48357 -27.73612 -25.76896 -23.85939 -23.11918 -19.65486 -19.16713 -16.52998 -15.63342 -15.26781 -14.96389 -14.38150 -14.06596 -13.30598 -13.02943 -12.30089 -12.17079 -11.76792 -11.52155 -11.29131 -11.15474 -11.01246 -10.85743 -10.61121 -10.48345 -10.15164 -9.30181 -9.18919 -8.90803 -8.59360 -7.88251 -7.24521 -6.16909 -4.21096 2.35915 2.86403 3.22677 3.28823 3.30980 4.30128 4.52173 5.11383 5.15378 5.51005 5.57321 5.67070 5.78331 5.87180 5.94430 6.12744 6.14515 6.23944 6.33967 6.45606 6.61836 6.87252 6.94483 7.07827 7.43016 7.58267 7.67059 7.76597 8.27472 8.88437 9.42883 10.91625 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.029839 B = 0.012563 C = 0.010215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.139197 B = 2228.155900 C = 2740.525176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.506 5.506 3 C 0.037 3.963 4 C 0.041 3.959 5 H 0.079 0.921 6 C -0.514 4.514 7 H 0.052 0.948 8 C 0.072 3.928 9 N -0.888 5.888 10 Si 0.888 3.112 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.275 1.275 14 C -0.086 4.086 15 H 0.067 0.933 16 C -0.016 4.016 17 S -0.352 6.352 18 C -0.036 4.036 19 C 0.043 3.957 20 H 0.047 0.953 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.026 0.974 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.265 0.735 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 -5.512 0.974 7.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.230 5.230 3 C -0.090 4.090 4 C 0.020 3.980 5 H 0.098 0.902 6 C -0.552 4.552 7 H 0.070 0.930 8 C -0.132 4.132 9 N -0.524 5.524 10 Si 0.716 3.284 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.200 1.200 14 C -0.107 4.107 15 H 0.086 0.914 16 C -0.163 4.163 17 S -0.126 6.126 18 C -0.185 4.185 19 C -0.068 4.068 20 H 0.065 0.935 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.044 0.956 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.531 -6.662 0.803 8.097 hybrid contribution -0.903 1.957 -0.937 2.350 sum -5.434 -4.705 -0.134 7.189 Atomic orbital electron populations 1.22502 0.89397 1.00788 1.00646 1.64348 1.06890 1.17945 1.33804 1.24016 0.98791 0.86075 1.00104 1.19417 0.93734 0.89322 0.95494 0.90238 1.20889 1.07994 1.18906 1.07387 0.93011 1.24966 0.95020 0.96583 0.96595 1.69872 1.11362 1.33683 1.37531 0.86711 0.77798 0.80264 0.83662 1.20179 1.21121 1.20010 1.22620 0.92240 1.01328 0.94487 0.91416 1.23710 1.02781 0.88334 1.01494 1.87555 1.39273 1.23947 1.61807 1.22978 0.97114 0.98768 0.99608 1.22378 0.98713 0.92579 0.93106 0.93457 0.92324 0.91791 0.95591 0.93488 0.92022 0.92544 0.88803 0.87763 0.89134 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.45 60.07 0.57 0.81 16 2 N -0.51 -9.39 5.61 -231.46 -1.30 -10.69 16 3 C 0.04 0.77 6.40 -0.87 -0.01 0.76 16 4 C 0.04 0.96 3.22 -90.89 -0.29 0.67 16 5 H 0.08 2.07 7.02 -51.93 -0.36 1.71 16 6 C -0.51 -12.95 6.20 -34.44 -0.21 -13.17 16 7 H 0.05 1.32 7.56 -52.49 -0.40 0.92 16 8 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 9 N -0.89 -24.23 12.65 55.43 0.70 -23.53 16 10 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 14 C -0.09 -1.80 2.78 -89.47 -0.25 -2.04 16 15 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 16 C -0.02 -0.32 6.56 37.07 0.24 -0.08 16 17 S -0.35 -6.51 23.30 -107.50 -2.50 -9.01 16 18 C -0.04 -0.61 7.30 36.14 0.26 -0.34 16 19 C 0.04 0.81 1.72 -68.12 -0.12 0.70 16 20 H 0.05 0.99 7.35 -51.93 -0.38 0.61 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.03 0.41 7.91 -51.92 -0.41 0.00 16 24 H 0.05 1.00 7.27 -51.93 -0.38 0.62 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 28 H 0.10 2.27 6.95 -51.93 -0.36 1.91 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 250.87 15.07 3.78 3.78 Total: -1.00 -25.94 250.87 -8.63 -34.57 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.39 Total: 0.55 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 0.10 Total: -10.93 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: -0.60 Total: -34.22 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -2.50 Total: -9.01 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -25.94 -8.63 -34.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676564.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.620 kcal (2) G-P(sol) polarization free energy of solvation -25.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds