Wall clock time and date at job start Mon Mar 30 2020 02:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.49787 * 111.00229 * 2 1 4 4 C 1.55512 * 106.72121 * 215.24782 * 3 2 1 5 5 H 1.09003 * 110.75730 * 236.90935 * 4 3 2 6 6 C 1.50698 * 110.62132 * 113.97951 * 4 3 2 7 7 H 1.08002 * 119.99594 * 309.39259 * 6 4 3 8 8 C 1.37876 * 120.00775 * 129.38942 * 6 4 3 9 9 N 1.31519 * 119.99447 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 120.00593 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46847 * 60.00009 * 10 8 6 12 12 H 1.48494 * 109.47085 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46781 * 300.00217 * 10 8 6 14 14 C 1.52119 * 103.49317 * 355.47535 * 4 3 2 15 15 H 1.08995 * 111.11111 * 273.41260 * 14 4 3 16 16 C 1.52831 * 119.19106 * 143.35652 * 14 4 3 17 17 S 1.84694 * 100.45415 * 201.72434 * 16 14 4 18 18 C 1.84370 * 97.07626 * 24.32199 * 17 16 14 19 19 C 1.44897 * 110.99959 * 245.60280 * 2 1 3 20 20 H 1.09003 * 107.91973 * 51.92955 * 19 2 1 21 21 H 1.08993 * 109.47731 * 174.39549 * 1 2 3 22 22 H 1.09000 * 109.47012 * 294.39543 * 1 2 3 23 23 H 1.09009 * 109.47073 * 54.39110 * 1 2 3 24 24 H 1.09004 * 110.01041 * 334.56004 * 3 2 1 25 25 H 1.09005 * 110.01532 * 95.93209 * 3 2 1 26 26 H 0.96998 * 120.00164 * 179.97438 * 9 8 6 27 27 H 1.08997 * 111.21523 * 83.92731 * 16 14 4 28 28 H 1.09005 * 111.25900 * 319.54290 * 16 14 4 29 29 H 1.09001 * 110.74955 * 248.00908 * 18 17 16 30 30 H 1.09003 * 110.91122 * 124.72465 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0059 1.3984 0.0000 4 6 3.3017 1.3801 -0.8595 5 1 4.1527 1.7434 -0.2833 6 6 3.1207 2.2012 -2.1101 7 1 2.2604 2.0392 -2.7426 8 6 4.0532 3.1594 -2.4469 9 7 5.1010 3.3563 -1.6769 10 14 3.8284 4.1776 -3.9968 11 1 2.5526 4.9329 -3.9120 12 1 4.9598 5.1298 -4.1319 13 1 3.7942 3.2792 -5.1786 14 6 3.4777 -0.0908 -1.2053 15 1 4.0279 -0.6146 -0.4238 16 6 4.0161 -0.4733 -2.5835 17 16 3.3979 -2.2087 -2.7149 18 6 1.9860 -2.0364 -1.5419 19 6 1.9883 -0.5588 -1.2319 20 1 1.5114 -0.0392 -2.0631 21 1 -0.3634 -1.0226 -0.1004 22 1 -0.3633 0.4245 0.9359 23 1 -0.3634 0.5984 -0.8356 24 1 1.2761 2.0781 -0.4400 25 1 2.2384 1.7087 1.0187 26 1 5.7573 4.0301 -1.9140 27 1 5.1053 -0.4399 -2.6046 28 1 3.5896 0.1575 -3.3635 29 1 2.1608 -2.6208 -0.6386 30 1 1.0490 -2.3304 -2.0150 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676564.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:24 Heat of formation + Delta-G solvation = -7.699892 kcal Electronic energy + Delta-G solvation = -12933.804075 eV Core-core repulsion = 10854.358371 eV Total energy + Delta-G solvation = -2079.445704 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.80352 -35.29087 -34.23902 -32.19029 -29.27302 -27.51623 -25.46319 -24.76830 -21.20583 -20.94658 -18.40939 -17.16813 -16.89484 -16.67419 -16.05422 -15.57812 -14.94812 -14.49934 -13.93218 -13.81028 -13.31884 -13.18271 -12.85501 -12.77333 -12.71153 -12.57026 -12.26993 -12.18780 -11.81487 -11.04074 -10.93095 -10.77557 -10.48870 -9.41225 -8.72666 -8.16583 -6.24815 0.89118 1.30840 1.40282 1.41970 1.48524 2.39464 3.00084 3.16209 3.60000 4.05367 4.10382 4.25687 4.31573 4.45791 4.50679 4.60282 4.66595 4.73871 4.79727 4.95272 4.98984 5.14783 5.26394 5.40923 5.56815 5.78338 5.80310 6.20459 6.33623 6.89314 7.40776 8.92035 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.029839 B = 0.012563 C = 0.010215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.139197 B = 2228.155900 C = 2740.525176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.505 5.505 3 C 0.045 3.955 4 C 0.033 3.967 5 H 0.044 0.956 6 C -0.512 4.512 7 H 0.047 0.953 8 C 0.025 3.975 9 N -0.921 5.921 10 Si 0.944 3.056 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.271 1.271 14 C -0.089 4.089 15 H 0.064 0.936 16 C -0.018 4.018 17 S -0.341 6.341 18 C -0.027 4.027 19 C 0.058 3.942 20 H 0.028 0.972 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.021 0.979 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.263 0.737 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 -6.686 0.819 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.229 5.229 3 C -0.082 4.082 4 C 0.012 3.988 5 H 0.063 0.937 6 C -0.550 4.550 7 H 0.065 0.935 8 C -0.175 4.175 9 N -0.560 5.560 10 Si 0.770 3.230 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.196 1.196 14 C -0.110 4.110 15 H 0.082 0.918 16 C -0.166 4.166 17 S -0.116 6.116 18 C -0.175 4.175 19 C -0.053 4.053 20 H 0.046 0.954 21 H 0.102 0.898 22 H 0.098 0.902 23 H 0.040 0.960 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.096 -7.849 0.646 9.959 hybrid contribution -0.457 2.273 -0.847 2.469 sum -6.553 -5.575 -0.201 8.606 Atomic orbital electron populations 1.22620 0.86936 1.02513 1.01373 1.64359 1.09153 1.16070 1.33301 1.23776 0.97326 0.87565 0.99569 1.19339 0.93873 0.90630 0.94924 0.93734 1.21057 1.07389 1.18765 1.07750 0.93500 1.25615 0.94904 0.97822 0.99128 1.69994 1.12266 1.34574 1.39161 0.85824 0.77675 0.78892 0.80632 1.19711 1.21116 1.19593 1.22511 0.94200 0.99667 0.94614 0.91777 1.23506 1.02388 0.90058 1.00608 1.87516 1.40104 1.21442 1.62494 1.23056 0.97473 0.97038 0.99968 1.22255 0.96577 0.93904 0.92593 0.95437 0.89816 0.90199 0.96044 0.94264 0.91632 0.92740 0.89515 0.89535 0.87553 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.39 9.45 127.69 1.21 1.59 16 2 N -0.50 -17.68 5.61 -886.20 -4.97 -22.65 16 3 C 0.05 1.85 6.40 86.60 0.55 2.40 16 4 C 0.03 1.58 3.22 -10.97 -0.04 1.55 16 5 H 0.04 2.41 7.02 -2.39 -0.02 2.39 16 6 C -0.51 -26.14 6.20 25.60 0.16 -25.98 16 7 H 0.05 2.40 7.56 -2.91 -0.02 2.38 16 8 C 0.03 1.32 5.46 84.65 0.46 1.78 16 9 N -0.92 -51.59 12.65 21.45 0.27 -51.31 16 10 Si 0.94 41.91 29.54 68.60 2.03 43.94 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 C -0.09 -3.71 2.78 -10.05 -0.03 -3.74 16 15 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 16 C -0.02 -0.73 6.56 71.93 0.47 -0.25 16 17 S -0.34 -11.97 23.30 -56.49 -1.32 -13.29 16 18 C -0.03 -0.82 7.30 71.32 0.52 -0.30 16 19 C 0.06 2.07 1.72 45.72 0.08 2.15 16 20 H 0.03 1.11 7.35 -2.39 -0.02 1.09 16 21 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.02 0.62 7.91 -2.38 -0.02 0.60 16 24 H 0.04 1.64 7.27 -2.39 -0.02 1.63 16 25 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 26 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.09 3.58 8.14 -2.39 -0.02 3.57 16 28 H 0.09 3.81 6.95 -2.38 -0.02 3.79 16 29 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -54.94 250.87 0.51 -54.43 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.11 Total: 9.69 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 3.39 Total: -20.81 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -4.70 Total: -73.96 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -11.97 SS G_CDS: -1.32 Total: -13.29 kcal Total: -54.94 0.51 -54.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676564.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.731 kcal (2) G-P(sol) polarization free energy of solvation -54.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds