Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46088 * 118.72899 * 2 1 4 4 C 1.53017 * 109.92580 * 198.38156 * 3 2 1 5 5 C 1.53006 * 109.74014 * 70.67058 * 4 3 2 6 6 C 1.52995 * 109.60521 * 191.07896 * 4 3 2 7 7 C 1.50699 * 109.47080 * 184.17829 * 6 4 3 8 8 H 1.08004 * 120.00299 * 0.02562 * 7 6 4 9 9 C 1.37882 * 120.00195 * 180.02562 * 7 6 4 10 10 N 1.31510 * 120.00137 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99605 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47138 * 89.99986 * 11 9 7 13 13 H 1.48497 * 109.47076 * 209.99960 * 11 9 7 14 14 H 1.48499 * 109.47438 * 330.00199 * 11 9 7 15 15 O 1.43247 * 108.66832 * 310.83864 * 4 3 2 16 16 C 1.42963 * 112.98857 * 68.36294 * 15 4 3 17 17 C 1.33872 * 118.72925 * 180.02562 * 2 1 3 18 18 O 1.21283 * 118.83444 * 358.37539 * 17 2 1 19 19 H 1.09003 * 109.47069 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46989 * 299.97706 * 1 2 3 21 21 H 1.08992 * 109.47228 * 59.97675 * 1 2 3 22 22 H 1.08996 * 109.39714 * 78.23863 * 3 2 1 23 23 H 1.09004 * 109.31672 * 318.47455 * 3 2 1 24 24 H 1.08996 * 109.47050 * 300.73850 * 5 4 3 25 25 H 1.09000 * 109.46884 * 60.73574 * 5 4 3 26 26 H 1.08999 * 109.47334 * 180.73851 * 5 4 3 27 27 H 1.08997 * 109.47418 * 304.17986 * 6 4 3 28 28 H 1.09005 * 109.46994 * 64.18294 * 6 4 3 29 29 H 0.97005 * 119.99954 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.41685 * 190.30305 * 16 15 4 31 31 H 1.08997 * 109.41914 * 70.50449 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1673 1.2811 0.0000 4 6 3.6151 1.0822 -0.4536 5 6 3.6480 0.7539 -1.9477 6 6 4.4154 2.3594 -0.1910 7 6 5.8126 2.1967 -0.7316 8 1 6.1009 1.2747 -1.2147 9 6 6.7231 3.2249 -0.6097 10 7 7.9423 3.0832 -1.0819 11 14 6.2248 4.8193 0.2264 12 1 6.5103 4.7259 1.6807 13 1 6.9952 5.9464 -0.3578 14 1 4.7728 5.0532 0.0211 15 8 4.1834 -0.0027 0.2894 16 6 3.6084 -1.2687 -0.0427 17 6 2.1086 -1.1739 -0.0005 18 8 1.4584 -2.1973 0.0291 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5135 0.8902 21 1 -0.3633 0.5142 -0.8897 22 1 2.1575 1.6992 1.0065 23 1 1.6653 1.9674 -0.6820 24 1 3.0725 -0.1530 -2.1332 25 1 3.2150 1.5806 -2.5109 26 1 4.6799 0.6002 -2.2633 27 1 3.9300 3.2006 -0.6858 28 1 4.4604 2.5457 0.8821 29 1 8.5829 3.8065 -0.9957 30 1 3.9443 -2.0184 0.6737 31 1 3.9250 -1.5589 -1.0446 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260792464.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = -73.584031 kcal Electronic energy + Delta-G solvation = -14960.744768 eV Core-core repulsion = 12435.689243 eV Total energy + Delta-G solvation = -2525.055525 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.58935 -37.81408 -35.17564 -33.57692 -31.74743 -28.74502 -27.63454 -27.19507 -25.11659 -23.06238 -20.39024 -18.19311 -17.35789 -16.54772 -16.37816 -15.90205 -15.24769 -14.51472 -14.04358 -13.85524 -13.37537 -12.95022 -12.81420 -12.33434 -12.16490 -11.92277 -11.67115 -11.52668 -11.23538 -11.06343 -10.60478 -10.11982 -9.89069 -9.70575 -9.28235 -8.90150 -8.60591 -8.57419 -6.06376 -4.04169 2.66404 3.04756 3.27773 3.34894 3.35696 4.20633 4.40835 4.56823 5.04631 5.26729 5.27852 5.32551 5.46133 5.50689 5.55525 5.67859 5.78593 5.80952 5.95590 6.21445 6.35726 6.51677 6.82886 6.90610 7.00991 7.37350 7.62337 7.72948 8.18978 8.49432 8.99246 9.53714 11.06598 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051275 B = 0.008968 C = 0.008208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.945578 B = 3121.366160 C = 3410.396348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.605 5.605 3 C 0.087 3.913 4 C 0.114 3.886 5 C -0.166 4.166 6 C 0.002 3.998 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.901 5.901 11 Si 0.875 3.125 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.267 1.267 15 O -0.343 6.343 16 C 0.044 3.956 17 C 0.491 3.509 18 O -0.560 6.560 19 H 0.087 0.913 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.263 0.737 30 H 0.123 0.877 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.994 -2.563 1.062 12.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.338 5.338 3 C -0.036 4.036 4 C 0.074 3.926 5 C -0.223 4.223 6 C -0.036 4.036 7 C -0.546 4.546 8 H 0.098 0.902 9 C -0.134 4.134 10 N -0.540 5.540 11 Si 0.703 3.297 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.191 1.191 15 O -0.261 6.261 16 C -0.036 4.036 17 C 0.280 3.720 18 O -0.440 6.440 19 H 0.106 0.894 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.140 0.860 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.999 -2.953 1.194 12.414 hybrid contribution -0.384 0.993 0.275 1.099 sum -12.383 -1.960 1.469 12.623 Atomic orbital electron populations 1.21724 0.79967 1.04151 1.01195 1.47435 1.07169 1.06612 1.72616 1.22414 0.94180 0.84416 1.02558 1.21955 0.89331 0.90150 0.91130 1.22359 1.04137 1.00336 0.95517 1.19602 0.96607 0.89653 0.97731 1.20958 0.93406 1.02483 1.37746 0.90185 1.24985 0.94830 0.98397 0.95202 1.69894 1.04418 1.33099 1.46549 0.86859 0.78945 0.83737 0.80173 1.20243 1.21395 1.19137 1.88410 1.61328 1.13329 1.63022 1.22700 0.87252 0.89672 1.03930 1.21265 0.92324 0.83069 0.75350 1.90659 1.67915 1.34040 1.51338 0.89412 0.92335 0.92269 0.90883 0.89959 0.94410 0.91694 0.89385 0.94693 0.95695 0.92702 0.85975 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.58 59.85 0.63 1.51 16 2 N -0.61 -9.24 3.13 -182.30 -0.57 -9.81 16 3 C 0.09 1.33 5.38 -4.26 -0.02 1.31 16 4 C 0.11 2.12 0.78 -90.61 -0.07 2.05 16 5 C -0.17 -2.92 7.58 37.16 0.28 -2.64 16 6 C 0.00 0.04 3.34 -27.89 -0.09 -0.06 16 7 C -0.51 -13.57 8.71 -34.44 -0.30 -13.87 16 8 H 0.08 2.32 6.64 -52.48 -0.35 1.97 16 9 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 10 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 11 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 15 O -0.34 -6.79 10.15 -35.23 -0.36 -7.14 16 16 C 0.04 0.73 6.32 35.83 0.23 0.96 16 17 C 0.49 8.38 6.79 -11.56 -0.08 8.30 16 18 O -0.56 -10.67 16.12 5.55 0.09 -10.58 16 19 H 0.09 1.15 6.71 -51.93 -0.35 0.81 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 1.09 8.10 -51.93 -0.42 0.66 16 23 H 0.08 1.09 8.09 -51.93 -0.42 0.66 16 24 H 0.04 0.60 5.96 -51.93 -0.31 0.29 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.09 1.75 6.36 -51.93 -0.33 1.42 16 27 H 0.04 0.74 7.20 -51.93 -0.37 0.36 16 28 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.09 1.36 6.91 -51.93 -0.36 1.00 16 LS Contribution 250.94 15.07 3.78 3.78 Total: -1.00 -31.18 250.94 -4.63 -35.81 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.16 Total: -1.27 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 0.48 Total: -0.66 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.20 Total: -35.94 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.27 Total: -17.72 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.18 -4.63 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792464.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.770 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds