Wall clock time and date at job start Mon Mar 30 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46159 * 118.66786 * 2 1 4 4 C 1.53022 * 109.88962 * 161.77235 * 3 2 1 5 5 C 1.53002 * 109.60737 * 289.05970 * 4 3 2 6 6 C 1.53002 * 109.60763 * 168.72863 * 4 3 2 7 7 C 1.50696 * 109.46997 * 180.32624 * 6 4 3 8 8 H 1.07999 * 120.00319 * 0.02562 * 7 6 4 9 9 C 1.37885 * 119.99717 * 180.02562 * 7 6 4 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 O 1.43248 * 108.80253 * 48.89401 * 4 3 2 16 16 C 1.42965 * 112.98993 * 291.72339 * 15 4 3 17 17 C 1.33874 * 118.72812 * 179.78876 * 2 1 3 18 18 O 1.21282 * 118.83516 * 1.90768 * 17 2 1 19 19 H 1.09007 * 109.47217 * 180.20943 * 1 2 3 20 20 H 1.09002 * 109.47412 * 300.21428 * 1 2 3 21 21 H 1.09007 * 109.47177 * 60.21172 * 1 2 3 22 22 H 1.09004 * 109.56644 * 41.55789 * 3 2 1 23 23 H 1.08999 * 109.26274 * 281.80724 * 3 2 1 24 24 H 1.08998 * 109.47171 * 299.67119 * 5 4 3 25 25 H 1.09003 * 109.47106 * 59.67081 * 5 4 3 26 26 H 1.09001 * 109.46993 * 179.66686 * 5 4 3 27 27 H 1.09005 * 109.46767 * 60.32975 * 6 4 3 28 28 H 1.09002 * 109.47113 * 300.33315 * 6 4 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 30 30 H 1.08995 * 109.41814 * 169.70223 * 16 15 4 31 31 H 1.09002 * 109.40968 * 289.49362 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1661 1.2824 0.0000 4 6 3.6151 1.0835 0.4501 5 6 3.6485 0.7599 1.9451 6 6 4.4155 2.3599 0.1831 7 6 5.8435 2.1579 0.6200 8 1 6.1497 1.2136 1.0452 9 6 6.7591 3.1789 0.4770 10 7 8.0055 3.0025 0.8578 11 14 6.2292 4.8125 -0.2577 12 1 6.4130 4.7757 -1.7308 13 1 4.7984 5.0559 0.0567 14 1 7.0550 5.9048 0.3170 15 8 4.1833 -0.0036 -0.2897 16 6 3.6083 -1.2686 0.0464 17 6 2.1084 -1.1740 0.0043 18 8 1.4584 -2.1974 -0.0273 19 1 -0.3634 -1.0277 0.0038 20 1 -0.3634 0.5172 0.8881 21 1 -0.3634 0.5106 -0.8919 22 1 1.6669 1.9714 0.6813 23 1 2.1539 1.6989 -1.0072 24 1 3.2105 1.5858 2.5055 25 1 3.0778 -0.1496 2.1328 26 1 4.6810 0.6129 2.2620 27 1 3.9778 3.1868 0.7425 28 1 4.3902 2.5884 -0.8824 29 1 8.6497 3.7206 0.7568 30 1 3.9441 -2.0205 -0.6677 31 1 3.9252 -1.5556 1.0491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260792476.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:23 Heat of formation + Delta-G solvation = -73.851168 kcal Electronic energy + Delta-G solvation = -14961.875019 eV Core-core repulsion = 12436.807909 eV Total energy + Delta-G solvation = -2525.067109 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.58335 -37.80979 -35.17051 -33.55328 -31.75437 -28.75128 -27.62540 -27.20686 -25.11427 -23.03774 -20.39889 -18.20522 -17.35684 -16.51588 -16.37476 -15.90082 -15.24736 -14.50708 -14.04183 -13.86662 -13.36395 -12.94849 -12.79815 -12.35279 -12.17385 -11.90343 -11.68408 -11.53713 -11.22847 -11.08103 -10.60339 -10.11224 -9.90044 -9.68772 -9.29970 -8.89768 -8.60665 -8.56798 -6.05725 -4.03273 2.66583 3.04676 3.27884 3.34933 3.35814 4.21234 4.41265 4.57069 5.04254 5.26211 5.28611 5.32444 5.45701 5.50818 5.54955 5.67777 5.77890 5.80861 5.95064 6.19550 6.34956 6.50952 6.80367 6.90098 7.02024 7.37141 7.62001 7.73917 8.19134 8.50589 9.00834 9.54418 11.07389 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051122 B = 0.008997 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.579366 B = 3111.522829 C = 3409.472478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.605 5.605 3 C 0.087 3.913 4 C 0.114 3.886 5 C -0.167 4.167 6 C 0.002 3.998 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.901 5.901 11 Si 0.875 3.125 12 H -0.277 1.277 13 H -0.267 1.267 14 H -0.288 1.288 15 O -0.340 6.340 16 C 0.044 3.956 17 C 0.491 3.509 18 O -0.560 6.560 19 H 0.087 0.913 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.123 0.877 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 -2.371 -0.499 12.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.338 5.338 3 C -0.036 4.036 4 C 0.074 3.926 5 C -0.224 4.224 6 C -0.036 4.036 7 C -0.544 4.544 8 H 0.098 0.902 9 C -0.134 4.134 10 N -0.540 5.540 11 Si 0.703 3.297 12 H -0.203 1.203 13 H -0.191 1.191 14 H -0.214 1.214 15 O -0.258 6.258 16 C -0.036 4.036 17 C 0.280 3.720 18 O -0.439 6.439 19 H 0.106 0.894 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.140 0.860 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.157 -2.765 -0.642 12.484 hybrid contribution -0.403 1.011 -0.228 1.112 sum -12.560 -1.754 -0.870 12.712 Atomic orbital electron populations 1.21725 0.79993 1.04148 1.01187 1.47447 1.07166 1.06604 1.72628 1.22427 0.94163 0.84390 1.02593 1.21943 0.89333 0.90205 0.91103 1.22355 1.04095 1.00394 0.95573 1.19612 0.96746 0.89704 0.97527 1.20927 0.91140 1.01292 1.41057 0.90202 1.24989 0.94834 0.98456 0.95169 1.69897 1.02851 1.33207 1.48025 0.86863 0.78928 0.84119 0.79828 1.20255 1.19142 1.21393 1.88430 1.61194 1.13193 1.63012 1.22706 0.87236 0.89770 1.03895 1.21266 0.92329 0.83052 0.75345 1.90659 1.67930 1.34029 1.51328 0.89416 0.92289 0.92330 0.89948 0.90879 0.91742 0.94294 0.89494 0.94703 0.95786 0.92719 0.85961 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.58 59.85 0.63 1.51 16 2 N -0.61 -9.24 3.13 -182.24 -0.57 -9.81 16 3 C 0.09 1.33 5.38 -4.22 -0.02 1.31 16 4 C 0.11 2.12 0.76 -90.61 -0.07 2.05 16 5 C -0.17 -2.90 7.66 37.16 0.28 -2.62 16 6 C 0.00 0.04 3.31 -27.88 -0.09 -0.06 16 7 C -0.51 -13.56 8.61 -34.44 -0.30 -13.86 16 8 H 0.08 2.33 6.93 -52.49 -0.36 1.97 16 9 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 10 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 11 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 O -0.34 -6.77 10.00 -35.23 -0.35 -7.12 16 16 C 0.04 0.73 6.32 35.83 0.23 0.95 16 17 C 0.49 8.39 6.80 -11.56 -0.08 8.31 16 18 O -0.56 -10.68 16.12 5.56 0.09 -10.59 16 19 H 0.09 1.15 6.71 -51.92 -0.35 0.81 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 22 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 23 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.04 0.61 5.95 -51.93 -0.31 0.30 16 26 H 0.09 1.70 6.63 -51.93 -0.34 1.36 16 27 H 0.03 0.74 7.20 -51.93 -0.37 0.36 16 28 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.09 1.36 6.90 -51.93 -0.36 1.00 16 LS Contribution 251.28 15.07 3.79 3.79 Total: -1.00 -31.27 251.28 -4.64 -35.92 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.19 Total: -1.36 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 0.49 Total: -0.64 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.20 Total: -36.00 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.26 Total: -17.71 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.27 -4.64 -35.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792476.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.933 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds