Wall clock time and date at job start Mon Mar 30 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46159 * 118.66786 * 2 1 4 4 C 1.53022 * 109.88962 * 161.77235 * 3 2 1 5 5 C 1.53002 * 109.60737 * 289.05970 * 4 3 2 6 6 C 1.53002 * 109.60763 * 168.72863 * 4 3 2 7 7 C 1.50696 * 109.46997 * 180.32624 * 6 4 3 8 8 H 1.07999 * 120.00319 * 0.02562 * 7 6 4 9 9 C 1.37885 * 119.99717 * 180.02562 * 7 6 4 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 O 1.43248 * 108.80253 * 48.89401 * 4 3 2 16 16 C 1.42965 * 112.98993 * 291.72339 * 15 4 3 17 17 C 1.33874 * 118.72812 * 179.78876 * 2 1 3 18 18 O 1.21282 * 118.83516 * 1.90768 * 17 2 1 19 19 H 1.09007 * 109.47217 * 180.20943 * 1 2 3 20 20 H 1.09002 * 109.47412 * 300.21428 * 1 2 3 21 21 H 1.09007 * 109.47177 * 60.21172 * 1 2 3 22 22 H 1.09004 * 109.56644 * 41.55789 * 3 2 1 23 23 H 1.08999 * 109.26274 * 281.80724 * 3 2 1 24 24 H 1.08998 * 109.47171 * 299.67119 * 5 4 3 25 25 H 1.09003 * 109.47106 * 59.67081 * 5 4 3 26 26 H 1.09001 * 109.46993 * 179.66686 * 5 4 3 27 27 H 1.09005 * 109.46767 * 60.32975 * 6 4 3 28 28 H 1.09002 * 109.47113 * 300.33315 * 6 4 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 30 30 H 1.08995 * 109.41814 * 169.70223 * 16 15 4 31 31 H 1.09002 * 109.40968 * 289.49362 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1661 1.2824 0.0000 4 6 3.6151 1.0835 0.4501 5 6 3.6485 0.7599 1.9451 6 6 4.4155 2.3599 0.1831 7 6 5.8435 2.1579 0.6200 8 1 6.1497 1.2136 1.0452 9 6 6.7591 3.1789 0.4770 10 7 8.0055 3.0025 0.8578 11 14 6.2292 4.8125 -0.2577 12 1 6.4130 4.7757 -1.7308 13 1 4.7984 5.0559 0.0567 14 1 7.0550 5.9048 0.3170 15 8 4.1833 -0.0036 -0.2897 16 6 3.6083 -1.2686 0.0464 17 6 2.1084 -1.1740 0.0043 18 8 1.4584 -2.1974 -0.0273 19 1 -0.3634 -1.0277 0.0038 20 1 -0.3634 0.5172 0.8881 21 1 -0.3634 0.5106 -0.8919 22 1 1.6669 1.9714 0.6813 23 1 2.1539 1.6989 -1.0072 24 1 3.2105 1.5858 2.5055 25 1 3.0778 -0.1496 2.1328 26 1 4.6810 0.6129 2.2620 27 1 3.9778 3.1868 0.7425 28 1 4.3902 2.5884 -0.8824 29 1 8.6497 3.7206 0.7568 30 1 3.9441 -2.0205 -0.6677 31 1 3.9252 -1.5556 1.0491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260792476.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:22 Heat of formation + Delta-G solvation = -96.497286 kcal Electronic energy + Delta-G solvation = -14962.857028 eV Core-core repulsion = 12436.807909 eV Total energy + Delta-G solvation = -2526.049119 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.90523 -39.22492 -36.42558 -35.35957 -33.55955 -30.11414 -29.27970 -28.46898 -26.29608 -24.80495 -21.91881 -19.61114 -18.92963 -18.25522 -17.69091 -17.18441 -16.56005 -16.20378 -15.61211 -15.32028 -14.79952 -14.37316 -14.14254 -13.89900 -13.61163 -13.16686 -12.98373 -12.94213 -12.87570 -12.57289 -12.34671 -11.75236 -11.60272 -11.33374 -11.15356 -10.67911 -10.28323 -9.80093 -8.18088 -6.20182 1.36286 1.43582 1.44438 1.54505 1.86693 2.43707 2.82179 3.19861 3.29989 3.73119 3.95764 4.12265 4.23062 4.39563 4.44936 4.52852 4.58304 4.69901 4.85982 4.90437 4.93905 5.16649 5.25199 5.30272 5.39283 5.70059 6.05556 6.30198 6.41112 6.86093 6.92962 7.40983 8.98564 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051122 B = 0.008997 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.579366 B = 3111.522829 C = 3409.472478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.094 3.906 4 C 0.107 3.893 5 C -0.160 4.160 6 C 0.002 3.998 7 C -0.504 4.504 8 H 0.037 0.963 9 C -0.001 4.001 10 N -0.956 5.956 11 Si 0.944 3.056 12 H -0.275 1.275 13 H -0.232 1.232 14 H -0.291 1.291 15 O -0.371 6.371 16 C 0.042 3.958 17 C 0.489 3.511 18 O -0.585 6.585 19 H 0.074 0.926 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.115 0.885 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.027 0.973 29 H 0.262 0.738 30 H 0.134 0.866 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.831 -0.924 -0.964 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C -0.028 4.028 4 C 0.068 3.932 5 C -0.217 4.217 6 C -0.036 4.036 7 C -0.542 4.542 8 H 0.056 0.944 9 C -0.197 4.197 10 N -0.598 5.598 11 Si 0.768 3.232 12 H -0.200 1.200 13 H -0.155 1.155 14 H -0.218 1.218 15 O -0.290 6.290 16 C -0.037 4.037 17 C 0.278 3.722 18 O -0.467 6.467 19 H 0.093 0.907 20 H 0.102 0.898 21 H 0.098 0.902 22 H 0.133 0.867 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.877 -1.310 -1.104 14.975 hybrid contribution 0.461 0.466 -0.055 0.658 sum -14.416 -0.844 -1.159 14.487 Atomic orbital electron populations 1.21935 0.77750 1.04054 1.03490 1.47507 1.08568 1.05938 1.71463 1.22344 0.91835 0.84737 1.03898 1.21920 0.91101 0.88634 0.91585 1.22259 1.02327 1.01851 0.95267 1.19569 0.94158 0.92282 0.97583 1.21214 0.93932 0.99425 1.39647 0.94442 1.25977 0.94705 1.03005 0.95980 1.70077 1.04524 1.34670 1.50498 0.85752 0.80267 0.78554 0.78618 1.20038 1.15485 1.21751 1.88370 1.62460 1.14575 1.63626 1.22813 0.87511 0.88741 1.04627 1.21192 0.92177 0.83429 0.75431 1.90652 1.68271 1.34926 1.52877 0.90731 0.89761 0.90193 0.86692 0.89932 0.89905 0.92860 0.92885 0.92641 0.95514 0.92876 0.84789 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.42 10.58 127.77 1.35 2.77 16 2 N -0.60 -16.45 3.13 -849.39 -2.66 -19.11 16 3 C 0.09 2.50 5.38 86.45 0.46 2.97 16 4 C 0.11 3.77 0.76 -10.78 -0.01 3.77 16 5 C -0.16 -5.34 7.66 71.98 0.55 -4.79 16 6 C 0.00 0.07 3.31 29.85 0.10 0.17 16 7 C -0.50 -27.31 8.61 25.60 0.22 -27.09 16 8 H 0.04 2.29 6.93 -2.91 -0.02 2.27 16 9 C 0.00 -0.06 5.47 84.66 0.46 0.41 16 10 N -0.96 -59.01 13.96 21.45 0.30 -58.71 16 11 Si 0.94 41.79 27.47 68.60 1.88 43.68 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 14 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 15 O -0.37 -14.61 10.00 -148.98 -1.49 -16.10 16 16 C 0.04 1.38 6.32 71.12 0.45 1.83 16 17 C 0.49 15.85 6.80 87.68 0.60 16.44 16 18 O -0.59 -21.59 16.12 -3.03 -0.05 -21.64 16 19 H 0.07 1.77 6.71 -2.38 -0.02 1.75 16 20 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.12 2.36 8.10 -2.39 -0.02 2.34 16 23 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 24 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.05 1.60 5.95 -2.39 -0.01 1.58 16 26 H 0.05 2.12 6.63 -2.39 -0.02 2.10 16 27 H 0.06 2.11 7.20 -2.38 -0.02 2.10 16 28 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.13 3.94 8.14 -2.39 -0.02 3.92 16 31 H 0.09 2.87 6.90 -2.39 -0.02 2.85 16 Total: -1.00 -68.90 251.28 3.23 -65.67 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.06 Total: 9.75 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 4.19 Total: -3.53 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -2.36 Total: -77.83 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.54 Total: -37.74 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.88 Total: 43.68 kcal Total: -68.90 3.23 -65.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792476.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.827 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds