Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99955 * 2 1 4 4 H 1.48500 * 109.47176 * 90.00116 * 3 2 1 5 5 H 1.48497 * 109.47174 * 209.99827 * 3 2 1 6 6 H 1.48499 * 109.47490 * 330.00321 * 3 2 1 7 7 C 1.37878 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00243 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00018 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50695 * 299.99774 * 9 7 2 11 11 C 1.53094 * 109.50593 * 179.91041 * 9 7 2 12 12 N 1.47015 * 109.25830 * 183.21542 * 11 9 7 13 13 C 1.46897 * 111.00319 * 182.39510 * 12 11 9 14 14 C 1.54038 * 113.81763 * 163.68724 * 13 12 11 15 15 O 1.44447 * 85.42368 * 223.23586 * 14 13 12 16 16 C 1.44176 * 93.38069 * 24.08887 * 15 14 13 17 17 C 1.47007 * 110.75338 * 58.61471 * 12 11 9 18 18 C 1.53096 * 109.25893 * 301.38608 * 17 12 11 19 19 O 1.43012 * 109.29398 * 56.82635 * 18 17 12 20 20 H 0.96999 * 119.99716 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.51122 * 303.14850 * 11 9 7 22 22 H 1.09001 * 109.50811 * 63.28472 * 11 9 7 23 23 H 1.09001 * 112.99746 * 295.51395 * 13 12 11 24 24 H 1.08997 * 113.86586 * 337.34103 * 14 13 12 25 25 H 1.09001 * 113.85892 * 109.04865 * 14 13 12 26 26 H 1.08998 * 113.86164 * 221.76530 * 16 15 14 27 27 H 1.09002 * 113.98142 * 90.07450 * 16 15 14 28 28 H 1.08998 * 109.50831 * 61.32136 * 17 12 11 29 29 H 1.09006 * 109.51161 * 181.40567 * 17 12 11 30 30 H 1.09005 * 109.50577 * 176.78125 * 18 17 12 31 31 H 1.08998 * 109.50856 * 296.86792 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6527 -0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6239 -2.5581 0.8878 11 6 2.2452 -3.6634 -0.0044 12 7 1.5063 -4.9319 -0.0833 13 6 2.4224 -6.0790 -0.0312 14 6 1.7275 -7.4159 0.2892 15 8 2.8453 -7.6523 1.1729 16 6 3.1315 -6.2476 1.3258 17 6 0.6752 -4.9760 -1.2951 18 6 -0.3032 -3.7986 -1.2795 19 8 0.4305 -2.5759 -1.1705 20 1 -0.4850 -0.8401 0.0004 21 1 2.9080 -3.5742 -0.8650 22 1 2.8338 -3.6416 0.9129 23 1 3.0945 -6.1265 -0.8880 24 1 0.7736 -7.3047 0.8047 25 1 1.6796 -8.1017 -0.5567 26 1 4.1947 -6.0088 1.3004 27 1 2.6084 -5.7769 2.1582 28 1 1.3128 -4.9077 -2.1765 29 1 0.1181 -5.9126 -1.3207 30 1 -0.8824 -3.7944 -2.2030 31 1 -0.9766 -3.8961 -0.4280 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260975525.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -54.186933 kcal Electronic energy + Delta-G solvation = -14833.240998 eV Core-core repulsion = 12309.026594 eV Total energy + Delta-G solvation = -2524.214404 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.37338 -38.20702 -34.54744 -32.88678 -30.13438 -28.93303 -26.59574 -25.81894 -23.97209 -22.30343 -20.21864 -19.70535 -17.35784 -16.42861 -16.13104 -15.74458 -14.95785 -14.54148 -14.24549 -13.95387 -13.71673 -13.38567 -12.64136 -12.62274 -11.80662 -11.67945 -11.17611 -11.07712 -10.80278 -10.63947 -10.37620 -10.11554 -9.81822 -9.70325 -8.73592 -8.52616 -8.35992 -7.97826 -6.40853 -4.20305 3.41437 3.45903 3.61596 3.74652 4.12927 4.27833 4.50311 4.92893 5.07483 5.23253 5.43035 5.45884 5.48115 5.51408 5.70727 5.78026 5.86314 6.01237 6.09773 6.14070 6.17250 6.28618 6.40882 6.51227 7.03348 7.33561 7.35925 8.02171 8.31161 8.63886 8.83131 9.63124 11.00379 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048809 B = 0.008261 C = 0.007353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.532298 B = 3388.501721 C = 3807.090022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.034 3.966 3 Si 1.074 2.926 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.606 4.606 8 H 0.057 0.943 9 C 0.208 3.792 10 H 0.016 0.984 11 C 0.038 3.962 12 N -0.531 5.531 13 C 0.008 3.992 14 C 0.047 3.953 15 O -0.387 6.387 16 C 0.048 3.952 17 C 0.023 3.977 18 C 0.057 3.943 19 O -0.378 6.378 20 H 0.280 0.720 21 H 0.032 0.968 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -10.599 -0.477 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.175 4.175 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.644 4.644 8 H 0.076 0.924 9 C 0.152 3.848 10 H 0.034 0.966 11 C -0.089 4.089 12 N -0.258 5.258 13 C -0.101 4.101 14 C -0.030 4.030 15 O -0.305 6.305 16 C -0.028 4.028 17 C -0.105 4.105 18 C -0.021 4.021 19 O -0.297 6.297 20 H 0.092 0.908 21 H 0.050 0.950 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.260 -9.099 -0.095 9.376 hybrid contribution 0.721 -1.844 -0.737 2.113 sum 2.981 -10.943 -0.832 11.372 Atomic orbital electron populations 1.70626 1.06957 1.31930 1.42578 1.25883 0.96532 1.02669 0.92452 0.83499 0.74700 0.74887 0.76789 1.21276 1.21414 1.20839 1.21842 0.93933 0.90554 1.58055 0.92442 1.19969 0.87581 0.92506 0.84713 0.96604 1.22812 0.97196 0.88548 1.00316 1.62687 1.22623 1.02560 1.37941 1.25028 0.94716 0.92021 0.98362 1.24057 0.91440 0.94364 0.93101 1.89673 1.47151 1.24433 1.69241 1.24011 1.00746 0.81187 0.96906 1.22717 0.96790 1.00031 0.90939 1.22390 0.93416 0.85853 1.00490 1.88442 1.60186 1.33872 1.47210 0.90791 0.94964 0.90893 0.91158 0.89291 0.89637 0.89391 0.89078 0.94677 0.91116 0.90417 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.53 55.43 0.75 -26.30 16 2 C 0.03 0.97 5.40 -17.82 -0.10 0.87 16 3 Si 1.07 25.01 29.90 -169.99 -5.08 19.92 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.61 -17.17 8.80 -34.44 -0.30 -17.47 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.21 5.35 2.26 -27.83 -0.06 5.29 16 10 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 11 C 0.04 0.82 4.77 -3.71 -0.02 0.80 16 12 N -0.53 -9.53 4.68 -234.25 -1.10 -10.63 16 13 C 0.01 0.12 3.38 -66.63 -0.23 -0.11 16 14 C 0.05 0.62 8.44 37.64 0.32 0.94 16 15 O -0.39 -5.81 12.46 -35.23 -0.44 -6.25 16 16 C 0.05 0.69 8.15 37.64 0.31 0.99 16 17 C 0.02 0.40 5.58 -3.72 -0.02 0.38 16 18 C 0.06 1.12 7.01 37.21 0.26 1.38 16 19 O -0.38 -9.72 9.16 -35.23 -0.32 -10.04 16 20 H 0.28 8.64 6.48 -40.82 -0.26 8.37 16 21 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 1.48 7.50 -51.93 -0.39 1.09 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 255.53 15.07 3.85 3.85 Total: -1.00 -31.28 255.53 -6.66 -37.93 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.48 Total: -1.57 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 0.16 Total: -6.92 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.35 Total: -36.92 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.76 Total: -16.29 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.28 -6.66 -37.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975525.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.256 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds