Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99955 * 2 1 4 4 H 1.48500 * 109.47176 * 90.00116 * 3 2 1 5 5 H 1.48497 * 109.47174 * 209.99827 * 3 2 1 6 6 H 1.48499 * 109.47490 * 330.00321 * 3 2 1 7 7 C 1.37878 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00243 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00018 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50695 * 299.99774 * 9 7 2 11 11 C 1.53094 * 109.50593 * 179.91041 * 9 7 2 12 12 N 1.47015 * 109.25830 * 183.21542 * 11 9 7 13 13 C 1.46897 * 111.00319 * 182.39510 * 12 11 9 14 14 C 1.54038 * 113.81763 * 163.68724 * 13 12 11 15 15 O 1.44447 * 85.42368 * 223.23586 * 14 13 12 16 16 C 1.44176 * 93.38069 * 24.08887 * 15 14 13 17 17 C 1.47007 * 110.75338 * 58.61471 * 12 11 9 18 18 C 1.53096 * 109.25893 * 301.38608 * 17 12 11 19 19 O 1.43012 * 109.29398 * 56.82635 * 18 17 12 20 20 H 0.96999 * 119.99716 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.51122 * 303.14850 * 11 9 7 22 22 H 1.09001 * 109.50811 * 63.28472 * 11 9 7 23 23 H 1.09001 * 112.99746 * 295.51395 * 13 12 11 24 24 H 1.08997 * 113.86586 * 337.34103 * 14 13 12 25 25 H 1.09001 * 113.85892 * 109.04865 * 14 13 12 26 26 H 1.08998 * 113.86164 * 221.76530 * 16 15 14 27 27 H 1.09002 * 113.98142 * 90.07450 * 16 15 14 28 28 H 1.08998 * 109.50831 * 61.32136 * 17 12 11 29 29 H 1.09006 * 109.51161 * 181.40567 * 17 12 11 30 30 H 1.09005 * 109.50577 * 176.78125 * 18 17 12 31 31 H 1.08998 * 109.50856 * 296.86792 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6527 -0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6239 -2.5581 0.8878 11 6 2.2452 -3.6634 -0.0044 12 7 1.5063 -4.9319 -0.0833 13 6 2.4224 -6.0790 -0.0312 14 6 1.7275 -7.4159 0.2892 15 8 2.8453 -7.6523 1.1729 16 6 3.1315 -6.2476 1.3258 17 6 0.6752 -4.9760 -1.2951 18 6 -0.3032 -3.7986 -1.2795 19 8 0.4305 -2.5759 -1.1705 20 1 -0.4850 -0.8401 0.0004 21 1 2.9080 -3.5742 -0.8650 22 1 2.8338 -3.6416 0.9129 23 1 3.0945 -6.1265 -0.8880 24 1 0.7736 -7.3047 0.8047 25 1 1.6796 -8.1017 -0.5567 26 1 4.1947 -6.0088 1.3004 27 1 2.6084 -5.7769 2.1582 28 1 1.3128 -4.9077 -2.1765 29 1 0.1181 -5.9126 -1.3207 30 1 -0.8824 -3.7944 -2.2030 31 1 -0.9766 -3.8961 -0.4280 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975525.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -78.384284 kcal Electronic energy + Delta-G solvation = -14834.290273 eV Core-core repulsion = 12309.026594 eV Total energy + Delta-G solvation = -2525.263680 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.57790 -39.85652 -36.17489 -34.94125 -31.92326 -30.29175 -27.85423 -27.40401 -25.73101 -24.09571 -21.71539 -21.10100 -19.29787 -17.76701 -17.39176 -17.09845 -16.66188 -16.08107 -15.79849 -15.73928 -15.49384 -15.00439 -14.01024 -13.79259 -13.65730 -13.42371 -12.66239 -12.65022 -12.34233 -12.25613 -11.93289 -11.85536 -11.51520 -10.85317 -10.77143 -10.51925 -10.23394 -9.49504 -8.67049 -6.47679 1.53956 1.63445 1.81126 2.54328 2.65408 2.76112 3.01888 3.13032 3.55559 3.93941 4.01048 4.13411 4.17098 4.28805 4.36403 4.38799 4.41464 4.51724 4.70366 4.75667 4.83884 4.86878 4.98363 5.05774 5.13733 5.70292 5.96717 5.99081 6.08755 6.51490 6.78576 7.46219 8.73097 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048809 B = 0.008261 C = 0.007353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.532298 B = 3388.501721 C = 3807.090022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.019 4.019 3 Si 1.122 2.878 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.626 4.626 8 H 0.059 0.941 9 C 0.207 3.793 10 H -0.016 1.016 11 C 0.055 3.945 12 N -0.536 5.536 13 C 0.003 3.997 14 C 0.056 3.944 15 O -0.400 6.400 16 C 0.048 3.952 17 C 0.030 3.970 18 C 0.047 3.953 19 O -0.412 6.412 20 H 0.265 0.735 21 H 0.022 0.978 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.034 0.966 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 -11.757 -0.884 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.221 4.221 3 Si 0.942 3.058 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.663 4.663 8 H 0.077 0.923 9 C 0.151 3.849 10 H 0.001 0.999 11 C -0.073 4.073 12 N -0.263 5.263 13 C -0.106 4.106 14 C -0.020 4.020 15 O -0.319 6.319 16 C -0.029 4.029 17 C -0.098 4.098 18 C -0.030 4.030 19 O -0.332 6.332 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.102 -10.300 -0.499 10.768 hybrid contribution 0.404 -1.593 -0.624 1.758 sum 3.505 -11.893 -1.123 12.449 Atomic orbital electron populations 1.70759 1.08018 1.30956 1.45322 1.27446 0.96590 1.06698 0.91328 0.82898 0.74078 0.70796 0.77980 1.19265 1.19520 1.20900 1.22278 0.94364 0.92156 1.57501 0.92305 1.19766 0.87890 0.93650 0.83611 0.99862 1.22432 0.95833 0.88931 1.00113 1.62647 1.23068 1.01997 1.38559 1.25186 0.94889 0.91519 0.98995 1.24186 0.90950 0.93356 0.93529 1.89671 1.47880 1.24599 1.69703 1.24062 1.01590 0.80929 0.96287 1.22698 0.96290 1.00313 0.90521 1.22701 0.93867 0.84966 1.01489 1.88308 1.61045 1.37240 1.46592 0.92483 0.95942 0.90376 0.90522 0.88984 0.86847 0.87958 0.89680 0.94721 0.87171 0.88066 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.25 13.53 21.45 0.29 -56.96 16 2 C -0.02 -1.09 5.40 84.65 0.46 -0.63 16 3 Si 1.12 50.20 29.90 68.60 2.05 52.25 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.63 -36.00 8.80 25.60 0.23 -35.78 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.21 10.88 2.26 29.88 0.07 10.95 16 10 H -0.02 -0.93 8.01 -2.39 -0.02 -0.95 16 11 C 0.05 2.31 4.77 86.31 0.41 2.72 16 12 N -0.54 -18.36 4.68 -906.06 -4.24 -22.60 16 13 C 0.00 0.07 3.38 45.62 0.15 0.23 16 14 C 0.06 1.29 8.44 72.30 0.61 1.90 16 15 O -0.40 -10.94 12.46 -148.98 -1.86 -12.80 16 16 C 0.05 1.27 8.15 72.30 0.59 1.86 16 17 C 0.03 0.94 5.58 86.31 0.48 1.43 16 18 C 0.05 1.83 7.01 72.01 0.50 2.34 16 19 O -0.41 -21.55 9.16 -148.98 -1.36 -22.92 16 20 H 0.26 16.97 6.48 -92.71 -0.60 16.37 16 21 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.08 3.14 7.50 -2.39 -0.02 3.13 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 2.67 7.69 -2.38 -0.02 2.66 16 30 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.35 255.53 -0.35 -68.70 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.27 Total: 9.32 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 3.50 Total: -14.99 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -3.95 Total: -79.56 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -3.22 Total: -35.72 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -68.35 -0.35 -68.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975525.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.688 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds