Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48495 * 109.46823 * 239.99771 * 3 2 1 5 5 H 1.48501 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46961 * 119.99706 * 3 2 1 7 7 C 1.38814 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99645 * 164.59087 * 7 2 1 9 9 N 1.36931 * 120.00009 * 344.59394 * 7 2 1 10 10 C 1.48206 * 120.32354 * 331.15430 * 9 7 2 11 11 C 1.53273 * 108.21495 * 232.95963 * 10 9 7 12 12 H 1.08994 * 109.62614 * 184.97544 * 11 10 9 13 13 C 1.53073 * 109.25233 * 64.81804 * 11 10 9 14 14 O 1.42890 * 109.42297 * 297.89106 * 13 11 10 15 15 C 1.42901 * 114.07986 * 298.80510 * 14 13 11 16 16 C 1.53076 * 109.43567 * 61.18137 * 15 14 13 17 17 H 1.09005 * 109.62862 * 181.73074 * 16 15 14 18 18 C 1.46927 * 120.58719 * 151.38999 * 9 7 2 19 19 C 1.53235 * 109.51507 * 305.28796 * 11 10 9 20 20 O 1.42894 * 109.54636 * 182.50582 * 19 11 10 21 21 H 0.96993 * 119.99878 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.35901 * 113.63829 * 10 9 7 23 23 H 1.09000 * 110.35629 * 352.86015 * 10 9 7 24 24 H 1.09001 * 109.48096 * 177.89774 * 13 11 10 25 25 H 1.09006 * 109.48685 * 57.88233 * 13 11 10 26 26 H 1.09004 * 109.47960 * 301.19479 * 15 14 13 27 27 H 1.09004 * 109.48938 * 181.17306 * 15 14 13 28 28 H 1.08997 * 109.59447 * 6.85316 * 18 9 7 29 29 H 1.09002 * 109.59085 * 246.55778 * 18 9 7 30 30 H 1.09005 * 109.54673 * 302.78423 * 19 11 10 31 31 H 0.96697 * 114.00077 * 60.46015 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2022 0.0005 8 1 3.0612 -1.2190 -0.2480 9 7 1.3626 -2.3666 0.3161 10 6 0.1977 -2.3502 1.2321 11 6 0.4547 -3.3643 2.3523 12 1 -0.4258 -3.4356 2.9907 13 6 1.6562 -2.9057 3.1824 14 8 2.8190 -2.8645 2.3529 15 6 3.1804 -4.1284 1.7924 16 6 2.0407 -4.6371 0.9060 17 1 2.3004 -5.6154 0.5013 18 6 1.8140 -3.6483 -0.2427 19 6 0.7595 -4.7360 1.7409 20 8 0.9417 -5.6948 2.7847 21 1 -0.4849 0.8400 -0.0004 22 1 -0.6991 -2.6337 0.6812 23 1 0.0668 -1.3569 1.6614 24 1 1.8193 -3.6047 4.0027 25 1 1.4617 -1.9117 3.5853 26 1 3.3633 -4.8430 2.5950 27 1 4.0840 -4.0155 1.1934 28 1 2.7463 -3.5013 -0.7879 29 1 1.0536 -4.0406 -0.9180 30 1 -0.0690 -5.0430 1.1025 31 1 0.1682 -5.8087 3.3536 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995012.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = -64.156909 kcal Electronic energy + Delta-G solvation = -15732.465199 eV Core-core repulsion = 13207.818465 eV Total energy + Delta-G solvation = -2524.646735 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74643 -35.78499 -34.98508 -32.36197 -31.72534 -29.64491 -25.70432 -24.99325 -24.20052 -21.52328 -21.46165 -17.89102 -17.04105 -16.56753 -15.29011 -15.06840 -14.71817 -14.37471 -13.89156 -13.41808 -13.22972 -12.72219 -12.35571 -11.97618 -11.50042 -11.13831 -10.92025 -10.68099 -10.58093 -10.34405 -10.11259 -10.01274 -9.81475 -9.43501 -9.25090 -8.66120 -8.23103 -6.51531 -5.67475 -3.06821 3.46719 3.51391 3.55175 4.56945 4.60185 4.70229 5.26202 5.38928 5.45808 5.59150 5.63809 5.66379 5.80996 5.99574 6.17952 6.23072 6.32519 6.36480 6.40110 6.62356 6.70173 6.79532 6.86916 7.27002 7.62800 7.91913 7.93201 8.10386 8.54416 9.30158 9.93907 10.51445 11.42754 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046469 B = 0.011924 C = 0.011611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.404629 B = 2347.546702 C = 2410.992798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.061 0.939 9 N -0.577 5.577 10 C 0.185 3.815 11 C -0.184 4.184 12 H 0.064 0.936 13 C 0.088 3.912 14 O -0.345 6.345 15 C 0.082 3.918 16 C -0.135 4.135 17 H 0.071 0.929 18 C 0.159 3.841 19 C 0.117 3.883 20 O -0.574 6.574 21 H 0.251 0.749 22 H 0.018 0.982 23 H 0.092 0.908 24 H 0.031 0.969 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.050 0.950 31 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -8.360 4.842 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.201 4.201 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.079 0.921 9 N -0.299 5.299 10 C 0.059 3.941 11 C -0.204 4.204 12 H 0.083 0.917 13 C 0.011 3.989 14 O -0.262 6.262 15 C 0.005 3.995 16 C -0.156 4.156 17 H 0.089 0.911 18 C 0.032 3.968 19 C 0.059 3.941 20 O -0.379 6.379 21 H 0.061 0.939 22 H 0.037 0.963 23 H 0.110 0.890 24 H 0.049 0.951 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.592 -8.062 4.496 9.367 hybrid contribution -0.454 0.607 0.351 0.835 sum 1.138 -7.455 4.847 8.964 Atomic orbital electron populations 1.69994 1.05152 1.25249 1.55617 1.24965 0.95262 0.98142 1.01745 0.86376 0.78827 0.83548 0.78076 1.21120 1.21928 1.21125 1.19029 0.91730 0.84448 1.39921 0.92116 1.44064 1.34125 1.01610 1.50106 1.20939 0.88546 0.97081 0.87520 1.23180 0.98428 0.97942 1.00888 0.91721 1.22192 0.85561 1.00133 0.91029 1.88074 1.43788 1.29003 1.65384 1.22241 0.96029 0.86099 0.95158 1.22371 0.95148 1.00009 0.98052 0.91055 1.20823 0.97976 0.86487 0.91534 1.21762 0.97437 0.87092 0.87815 1.86474 1.42727 1.62702 1.46011 0.93877 0.96350 0.89015 0.95069 0.90002 0.94465 0.90191 0.92136 0.96499 0.93212 0.78498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.72 11.14 55.49 0.62 -26.10 16 2 C 0.00 -0.12 4.96 -17.43 -0.09 -0.21 16 3 Si 0.90 22.35 29.58 -169.99 -5.03 17.32 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.14 9.03 -15.06 -0.14 -6.27 16 8 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 9 N -0.58 -14.46 1.78 -171.19 -0.31 -14.77 16 10 C 0.19 4.39 4.71 -2.96 -0.01 4.38 16 11 C -0.18 -3.49 2.95 -90.32 -0.27 -3.76 16 12 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 13 C 0.09 1.71 6.09 37.20 0.23 1.94 16 14 O -0.35 -7.53 8.84 -35.23 -0.31 -7.84 16 15 C 0.08 1.54 6.10 37.20 0.23 1.77 16 16 C -0.14 -2.49 3.02 -90.32 -0.27 -2.76 16 17 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 18 C 0.16 3.38 5.91 -3.67 -0.02 3.36 16 19 C 0.12 2.07 3.02 -26.48 -0.08 1.99 16 20 O -0.57 -8.93 12.29 -35.23 -0.43 -9.36 16 21 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 24 H 0.03 0.55 7.82 -51.93 -0.41 0.14 16 25 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.04 0.66 7.82 -51.93 -0.41 0.26 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.37 4.16 9.09 45.56 0.41 4.57 16 LS Contribution 242.75 15.07 3.66 3.66 Total: -1.00 -30.88 242.75 -5.86 -36.74 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.64 Total: -0.08 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -0.42 Total: 0.43 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.31 Total: -40.86 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.74 Total: -17.20 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.88 -5.86 -36.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995012.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.415 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds