Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48495 * 109.46823 * 239.99771 * 3 2 1 5 5 H 1.48501 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46961 * 119.99706 * 3 2 1 7 7 C 1.38814 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99645 * 164.59087 * 7 2 1 9 9 N 1.36931 * 120.00009 * 344.59394 * 7 2 1 10 10 C 1.48206 * 120.32354 * 331.15430 * 9 7 2 11 11 C 1.53273 * 108.21495 * 232.95963 * 10 9 7 12 12 H 1.08994 * 109.62614 * 184.97544 * 11 10 9 13 13 C 1.53073 * 109.25233 * 64.81804 * 11 10 9 14 14 O 1.42890 * 109.42297 * 297.89106 * 13 11 10 15 15 C 1.42901 * 114.07986 * 298.80510 * 14 13 11 16 16 C 1.53076 * 109.43567 * 61.18137 * 15 14 13 17 17 H 1.09005 * 109.62862 * 181.73074 * 16 15 14 18 18 C 1.46927 * 120.58719 * 151.38999 * 9 7 2 19 19 C 1.53235 * 109.51507 * 305.28796 * 11 10 9 20 20 O 1.42894 * 109.54636 * 182.50582 * 19 11 10 21 21 H 0.96993 * 119.99878 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.35901 * 113.63829 * 10 9 7 23 23 H 1.09000 * 110.35629 * 352.86015 * 10 9 7 24 24 H 1.09001 * 109.48096 * 177.89774 * 13 11 10 25 25 H 1.09006 * 109.48685 * 57.88233 * 13 11 10 26 26 H 1.09004 * 109.47960 * 301.19479 * 15 14 13 27 27 H 1.09004 * 109.48938 * 181.17306 * 15 14 13 28 28 H 1.08997 * 109.59447 * 6.85316 * 18 9 7 29 29 H 1.09002 * 109.59085 * 246.55778 * 18 9 7 30 30 H 1.09005 * 109.54673 * 302.78423 * 19 11 10 31 31 H 0.96697 * 114.00077 * 60.46015 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2022 0.0005 8 1 3.0612 -1.2190 -0.2480 9 7 1.3626 -2.3666 0.3161 10 6 0.1977 -2.3502 1.2321 11 6 0.4547 -3.3643 2.3523 12 1 -0.4258 -3.4356 2.9907 13 6 1.6562 -2.9057 3.1824 14 8 2.8190 -2.8645 2.3529 15 6 3.1804 -4.1284 1.7924 16 6 2.0407 -4.6371 0.9060 17 1 2.3004 -5.6154 0.5013 18 6 1.8140 -3.6483 -0.2427 19 6 0.7595 -4.7360 1.7409 20 8 0.9417 -5.6948 2.7847 21 1 -0.4849 0.8400 -0.0004 22 1 -0.6991 -2.6337 0.6812 23 1 0.0668 -1.3569 1.6614 24 1 1.8193 -3.6047 4.0027 25 1 1.4617 -1.9117 3.5853 26 1 3.3633 -4.8430 2.5950 27 1 4.0840 -4.0155 1.1934 28 1 2.7463 -3.5013 -0.7879 29 1 1.0536 -4.0406 -0.9180 30 1 -0.0690 -5.0430 1.1025 31 1 0.1682 -5.8087 3.3536 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995012.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = -86.700904 kcal Electronic energy + Delta-G solvation = -15733.442780 eV Core-core repulsion = 13207.818465 eV Total energy + Delta-G solvation = -2525.624316 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27654 -37.13245 -36.79143 -34.13394 -33.38177 -31.46517 -27.34807 -26.96109 -25.65529 -23.34639 -23.06263 -19.51623 -18.84573 -17.88885 -17.02906 -16.71923 -16.48211 -15.92457 -15.56129 -15.07309 -15.00271 -14.31959 -14.00650 -13.56328 -13.15979 -12.99477 -12.70544 -12.51938 -12.41166 -11.99007 -11.85439 -11.72528 -11.56416 -11.02649 -10.78781 -10.54825 -9.95955 -8.51973 -7.79115 -5.19984 1.47360 1.50420 1.56776 2.56881 3.18504 3.28587 3.41991 3.75199 3.83525 3.96193 4.12946 4.15303 4.29783 4.51581 4.72694 4.79694 4.80760 4.84266 4.90418 5.00249 5.11744 5.15904 5.32673 5.44659 5.66243 5.74754 6.46869 6.62353 6.89263 7.22100 7.92324 8.45673 9.28345 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046469 B = 0.011924 C = 0.011611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.404629 B = 2347.546702 C = 2410.992798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.056 4.056 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.055 0.945 9 N -0.593 5.593 10 C 0.191 3.809 11 C -0.175 4.175 12 H 0.092 0.908 13 C 0.087 3.913 14 O -0.379 6.379 15 C 0.081 3.919 16 C -0.130 4.130 17 H 0.098 0.902 18 C 0.154 3.846 19 C 0.128 3.872 20 O -0.572 6.572 21 H 0.246 0.754 22 H -0.002 1.002 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.054 0.946 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 -9.866 5.642 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.249 4.249 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.073 0.927 9 N -0.315 5.315 10 C 0.065 3.935 11 C -0.196 4.196 12 H 0.110 0.890 13 C 0.010 3.990 14 O -0.297 6.297 15 C 0.004 3.996 16 C -0.151 4.151 17 H 0.116 0.884 18 C 0.028 3.972 19 C 0.069 3.931 20 O -0.380 6.380 21 H 0.055 0.945 22 H 0.016 0.984 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.147 -9.606 5.309 11.184 hybrid contribution -0.619 1.002 0.106 1.183 sum 1.528 -8.604 5.415 10.280 Atomic orbital electron populations 1.70137 1.06284 1.25352 1.57219 1.25601 0.95978 1.00833 1.02519 0.85459 0.77583 0.80124 0.78006 1.20410 1.22184 1.21172 1.19229 0.91624 0.85787 1.38807 0.92746 1.44257 1.34158 1.02175 1.50914 1.20700 0.87551 0.96726 0.88503 1.23040 0.99559 0.97497 0.99458 0.89029 1.22239 0.85061 1.00211 0.91474 1.88024 1.44632 1.31017 1.66054 1.22367 0.96260 0.85342 0.95663 1.22261 0.95692 1.00079 0.97028 0.88427 1.20953 0.97681 0.85707 0.92839 1.21492 0.96927 0.86444 0.88265 1.86427 1.44294 1.61449 1.45784 0.94478 0.98398 0.92540 0.92405 0.91359 0.92842 0.89677 0.92272 0.96514 0.92855 0.75945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 11.14 21.65 0.24 -56.12 16 2 C -0.06 -3.17 4.96 84.86 0.42 -2.75 16 3 Si 0.96 46.61 29.58 68.60 2.03 48.64 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 7 C -0.22 -12.52 9.03 84.03 0.76 -11.76 16 8 H 0.05 3.06 7.88 -2.91 -0.02 3.04 16 9 N -0.59 -29.71 1.78 -695.51 -1.24 -30.95 16 10 C 0.19 9.11 4.71 86.14 0.41 9.52 16 11 C -0.18 -6.32 2.95 -10.60 -0.03 -6.35 16 12 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 13 C 0.09 3.22 6.09 72.01 0.44 3.66 16 14 O -0.38 -15.99 8.84 -148.98 -1.32 -17.31 16 15 C 0.08 2.81 6.10 72.01 0.44 3.25 16 16 C -0.13 -4.43 3.02 -10.60 -0.03 -4.46 16 17 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 18 C 0.15 6.40 5.91 86.39 0.51 6.91 16 19 C 0.13 4.08 3.02 30.76 0.09 4.18 16 20 O -0.57 -15.15 12.29 -148.98 -1.83 -16.98 16 21 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 22 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 23 H 0.06 3.08 6.16 -2.39 -0.01 3.07 16 24 H 0.06 1.83 7.82 -2.39 -0.02 1.81 16 25 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 26 H 0.05 1.70 7.82 -2.39 -0.02 1.68 16 27 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.39 6.89 9.09 -74.06 -0.67 6.21 16 Total: -1.00 -65.81 242.75 1.33 -64.47 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.45 Total: 6.06 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 3.00 Total: 2.19 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -1.00 Total: -87.06 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -3.15 Total: -34.29 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -65.81 1.33 -64.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995012.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.230 kcal (2) G-P(sol) polarization free energy of solvation -65.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds