Wall clock time and date at job start Mon Mar 30 2020 02:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48496 * 109.47706 * 240.00264 * 3 2 1 5 5 H 1.48501 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46924 * 120.00322 * 3 2 1 7 7 C 1.37878 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99380 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.42502 * 302.30948 * 9 7 2 11 11 C 1.54904 * 110.37416 * 64.63200 * 9 7 2 12 12 C 1.55138 * 101.65447 * 155.89669 * 11 9 7 13 13 C 1.54326 * 103.01997 * 324.34494 * 12 11 9 14 14 N 1.47442 * 107.22974 * 22.28411 * 13 12 11 15 15 C 1.46897 * 110.99760 * 123.25979 * 14 13 12 16 16 C 1.53050 * 113.14992 * 170.90099 * 15 14 13 17 17 S 1.81418 * 89.93284 * 211.83163 * 16 15 14 18 18 C 1.53044 * 113.15081 * 70.53329 * 15 14 13 19 19 H 0.96997 * 120.00045 * 359.97438 * 1 2 3 20 20 H 1.08999 * 110.99045 * 37.80582 * 11 9 7 21 21 H 1.08999 * 110.98981 * 273.98662 * 11 9 7 22 22 H 1.09005 * 110.71120 * 205.96260 * 12 11 9 23 23 H 1.08997 * 110.86172 * 82.79585 * 12 11 9 24 24 H 1.08996 * 109.88811 * 262.87867 * 13 12 11 25 25 H 1.09000 * 109.89088 * 141.68881 * 13 12 11 26 26 H 1.08997 * 112.49835 * 300.68556 * 15 14 13 27 27 H 1.09001 * 113.14699 * 327.11372 * 16 15 14 28 28 H 1.09000 * 113.14559 * 96.55218 * 16 15 14 29 29 H 1.09004 * 113.14108 * 263.39824 * 18 15 14 30 30 H 1.08994 * 113.15031 * 32.84099 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5883 -2.5557 0.8630 11 6 0.4420 -2.6547 -1.3124 12 6 0.2930 -4.1960 -1.4077 13 6 1.6342 -4.7105 -0.8437 14 7 2.1939 -3.6378 -0.0011 15 6 2.4416 -4.1169 1.3653 16 6 3.2239 -3.1176 2.2208 17 16 3.9904 -4.4927 3.1224 18 6 3.6093 -5.1022 1.4550 19 1 -0.4850 0.8400 0.0004 20 1 0.9991 -2.2630 -2.1634 21 1 -0.5321 -2.1726 -1.2299 22 1 0.1660 -4.5076 -2.4444 23 1 -0.5404 -4.5438 -0.7973 24 1 2.3187 -4.9348 -1.6617 25 1 1.4655 -5.6041 -0.2429 26 1 1.5357 -4.4796 1.8508 27 1 3.9399 -2.5300 1.6461 28 1 2.5838 -2.4976 2.8483 29 1 3.2920 -6.1449 1.4419 30 1 4.3992 -4.8975 0.7324 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:26 Heat of formation + Delta-G solvation = 23.725286 kcal Electronic energy + Delta-G solvation = -12805.501182 eV Core-core repulsion = 10727.418177 eV Total energy + Delta-G solvation = -2078.083006 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.50308 -34.83765 -32.58086 -28.99380 -28.38678 -25.64717 -24.38999 -21.34139 -19.89469 -19.27306 -16.74668 -16.06425 -15.23843 -14.80895 -14.42811 -13.94505 -13.07198 -12.59289 -12.39884 -12.33089 -11.89221 -11.47024 -11.17763 -11.04635 -10.87673 -10.61933 -10.38830 -10.15790 -9.84869 -9.75898 -9.53226 -9.05792 -8.43696 -7.49656 -7.40268 -6.04845 -4.05836 2.16899 2.38253 3.31709 3.36435 3.39339 4.38559 4.82093 4.86784 5.26195 5.36440 5.52872 5.56320 5.65945 5.81357 5.91414 5.98387 6.20562 6.23281 6.43905 6.51776 6.54108 6.96167 7.01277 7.38144 7.45982 7.80303 8.02773 8.12589 8.45620 8.99092 9.58162 11.04476 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.012219 C = 0.009026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.592927 B = 2290.905731 C = 3101.526577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.494 4.494 8 H 0.063 0.937 9 C 0.210 3.790 10 H 0.015 0.985 11 C -0.104 4.104 12 C -0.151 4.151 13 C 0.046 3.954 14 N -0.514 5.514 15 C 0.081 3.919 16 C -0.038 4.038 17 S -0.344 6.344 18 C -0.062 4.062 19 H 0.261 0.739 20 H 0.057 0.943 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 -7.525 0.091 7.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.533 4.533 8 H 0.081 0.919 9 C 0.104 3.896 10 H 0.033 0.967 11 C -0.143 4.143 12 C -0.190 4.190 13 C -0.082 4.082 14 N -0.240 5.240 15 C -0.030 4.030 16 C -0.186 4.186 17 S -0.120 6.120 18 C -0.210 4.210 19 H 0.070 0.930 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.528 -7.618 1.193 8.480 hybrid contribution -0.787 0.946 -0.617 1.377 sum 2.740 -6.673 0.576 7.236 Atomic orbital electron populations 1.69937 1.05891 1.26739 1.50782 1.24935 0.94843 0.99040 0.95358 0.86627 0.79503 0.83005 0.78679 1.20239 1.21480 1.20296 1.20969 0.93295 0.89037 1.49998 0.91850 1.20136 0.88465 0.87579 0.93405 0.96689 1.22639 1.01299 0.90591 0.99756 1.22889 0.96649 0.99772 0.99686 1.22673 0.95157 0.93520 0.96879 1.63957 1.47339 1.06479 1.06209 1.22966 0.95759 0.92360 0.91920 1.24339 1.00449 0.97279 0.96569 1.88716 1.84995 1.19365 1.18887 1.24426 1.01173 1.02453 0.92991 0.92955 0.92374 0.90847 0.92505 0.92878 0.91647 0.94327 0.91085 0.86582 0.88808 0.89763 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.68 12.27 55.43 0.68 -24.00 16 2 C 0.06 1.59 5.34 -17.82 -0.10 1.49 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.49 -12.78 7.96 -34.44 -0.27 -13.05 16 8 H 0.06 1.65 7.40 -52.49 -0.39 1.26 16 9 C 0.21 4.93 2.12 -67.34 -0.14 4.79 16 10 H 0.02 0.40 7.81 -51.93 -0.41 -0.01 16 11 C -0.10 -2.31 5.86 -24.60 -0.14 -2.46 16 12 C -0.15 -2.71 6.94 -24.91 -0.17 -2.88 16 13 C 0.05 0.79 6.59 -2.83 -0.02 0.78 16 14 N -0.51 -10.21 4.74 -229.05 -1.09 -11.29 16 15 C 0.08 1.45 2.36 -67.67 -0.16 1.29 16 16 C -0.04 -0.70 6.60 37.18 0.25 -0.46 16 17 S -0.34 -5.82 24.80 -107.50 -2.67 -8.49 16 18 C -0.06 -0.95 7.28 37.18 0.27 -0.67 16 19 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 20 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 21 H 0.07 1.77 7.57 -51.93 -0.39 1.38 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.04 0.59 7.48 -51.93 -0.39 0.21 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.12 2.23 7.68 -51.93 -0.40 1.83 16 28 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 255.03 15.07 3.84 3.84 Total: -1.00 -26.47 255.03 -9.23 -35.70 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.49 Total: -0.37 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.49 Total: -11.18 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.41 Total: -35.29 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -2.67 Total: -8.49 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.47 -9.23 -35.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.424 kcal (2) G-P(sol) polarization free energy of solvation -26.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds