Wall clock time and date at job start Mon Mar 30 2020 02:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48496 * 109.47706 * 240.00264 * 3 2 1 5 5 H 1.48501 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46924 * 120.00322 * 3 2 1 7 7 C 1.37878 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99380 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.42502 * 302.30948 * 9 7 2 11 11 C 1.54904 * 110.37416 * 64.63200 * 9 7 2 12 12 C 1.55138 * 101.65447 * 155.89669 * 11 9 7 13 13 C 1.54326 * 103.01997 * 324.34494 * 12 11 9 14 14 N 1.47442 * 107.22974 * 22.28411 * 13 12 11 15 15 C 1.46897 * 110.99760 * 123.25979 * 14 13 12 16 16 C 1.53050 * 113.14992 * 170.90099 * 15 14 13 17 17 S 1.81418 * 89.93284 * 211.83163 * 16 15 14 18 18 C 1.53044 * 113.15081 * 70.53329 * 15 14 13 19 19 H 0.96997 * 120.00045 * 359.97438 * 1 2 3 20 20 H 1.08999 * 110.99045 * 37.80582 * 11 9 7 21 21 H 1.08999 * 110.98981 * 273.98662 * 11 9 7 22 22 H 1.09005 * 110.71120 * 205.96260 * 12 11 9 23 23 H 1.08997 * 110.86172 * 82.79585 * 12 11 9 24 24 H 1.08996 * 109.88811 * 262.87867 * 13 12 11 25 25 H 1.09000 * 109.89088 * 141.68881 * 13 12 11 26 26 H 1.08997 * 112.49835 * 300.68556 * 15 14 13 27 27 H 1.09001 * 113.14699 * 327.11372 * 16 15 14 28 28 H 1.09000 * 113.14559 * 96.55218 * 16 15 14 29 29 H 1.09004 * 113.14108 * 263.39824 * 18 15 14 30 30 H 1.08994 * 113.15031 * 32.84099 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5883 -2.5557 0.8630 11 6 0.4420 -2.6547 -1.3124 12 6 0.2930 -4.1960 -1.4077 13 6 1.6342 -4.7105 -0.8437 14 7 2.1939 -3.6378 -0.0011 15 6 2.4416 -4.1169 1.3653 16 6 3.2239 -3.1176 2.2208 17 16 3.9904 -4.4927 3.1224 18 6 3.6093 -5.1022 1.4550 19 1 -0.4850 0.8400 0.0004 20 1 0.9991 -2.2630 -2.1634 21 1 -0.5321 -2.1726 -1.2299 22 1 0.1660 -4.5076 -2.4444 23 1 -0.5404 -4.5438 -0.7973 24 1 2.3187 -4.9348 -1.6617 25 1 1.4655 -5.6041 -0.2429 26 1 1.5357 -4.4796 1.8508 27 1 3.9399 -2.5300 1.6461 28 1 2.5838 -2.4976 2.8483 29 1 3.2920 -6.1449 1.4419 30 1 4.3992 -4.8975 0.7324 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261013614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:26 Heat of formation + Delta-G solvation = 8.052752 kcal Electronic energy + Delta-G solvation = -12806.180794 eV Core-core repulsion = 10727.418177 eV Total energy + Delta-G solvation = -2078.762618 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05965 -36.34864 -34.53070 -30.55042 -30.15048 -27.04733 -26.25488 -22.85533 -21.57989 -20.82106 -18.56932 -17.61908 -16.79963 -16.37248 -16.22641 -15.43598 -14.67102 -14.24654 -13.91251 -13.75195 -13.55433 -12.98437 -12.87643 -12.76076 -12.61621 -12.36073 -12.05940 -11.72410 -11.46872 -11.36054 -11.07102 -10.93568 -10.44542 -9.02792 -8.83566 -8.07901 -6.14294 0.83303 0.99120 1.45017 1.45410 1.52495 2.45233 3.22735 3.33624 3.44964 3.98566 4.09216 4.13135 4.30508 4.47481 4.51189 4.53308 4.77473 4.80740 4.88607 4.99180 5.07670 5.23352 5.39869 5.58558 5.68772 5.79654 6.21389 6.47761 6.59459 6.96071 7.52919 9.00026 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.012219 C = 0.009026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.592927 B = 2290.905731 C = 3101.526577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.057 0.943 9 C 0.213 3.787 10 H -0.019 1.019 11 C -0.103 4.103 12 C -0.140 4.140 13 C 0.045 3.955 14 N -0.521 5.521 15 C 0.078 3.922 16 C -0.044 4.044 17 S -0.340 6.340 18 C -0.042 4.042 19 H 0.259 0.741 20 H 0.042 0.958 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -9.096 -0.341 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.106 3.894 10 H -0.001 1.001 11 C -0.142 4.142 12 C -0.179 4.179 13 C -0.082 4.082 14 N -0.247 5.247 15 C -0.033 4.033 16 C -0.192 4.192 17 S -0.116 6.116 18 C -0.190 4.190 19 H 0.068 0.932 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.101 0.899 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.507 -9.209 0.761 10.281 hybrid contribution -1.077 1.403 -0.456 1.827 sum 3.430 -7.805 0.306 8.531 Atomic orbital electron populations 1.70055 1.07066 1.27135 1.52077 1.25615 0.95521 1.01961 0.95443 0.85747 0.78363 0.79595 0.78741 1.19764 1.21486 1.19917 1.21244 0.93138 0.90424 1.49002 0.92440 1.19886 0.88498 0.88410 0.92582 1.00095 1.22438 0.99286 0.94053 0.98423 1.22825 0.97522 0.95888 1.01628 1.22796 0.94809 0.93380 0.97254 1.63848 1.46348 1.06743 1.07721 1.23019 0.96558 0.92953 0.90749 1.24244 1.00286 0.97876 0.96838 1.88720 1.84677 1.18214 1.19991 1.24340 0.99807 1.03189 0.91706 0.93224 0.93871 0.93587 0.89919 0.92298 0.89938 0.91688 0.91266 0.87790 0.90679 0.86862 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 12.27 21.45 0.26 -51.99 16 2 C 0.01 0.71 5.34 84.66 0.45 1.16 16 3 Si 0.95 43.15 29.54 68.60 2.03 45.17 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.50 -26.21 7.96 25.60 0.20 -26.01 16 8 H 0.06 3.02 7.40 -2.91 -0.02 3.00 16 9 C 0.21 10.12 2.12 44.64 0.09 10.21 16 10 H -0.02 -1.00 7.81 -2.39 -0.02 -1.02 16 11 C -0.10 -4.60 5.86 31.98 0.19 -4.42 16 12 C -0.14 -4.72 6.94 31.78 0.22 -4.50 16 13 C 0.05 1.42 6.59 86.65 0.57 1.99 16 14 N -0.52 -19.97 4.74 -878.60 -4.17 -24.14 16 15 C 0.08 2.67 2.36 44.95 0.11 2.78 16 16 C -0.04 -1.60 6.60 72.00 0.48 -1.13 16 17 S -0.34 -10.89 24.80 -56.49 -1.40 -12.29 16 18 C -0.04 -1.16 7.28 72.00 0.52 -0.63 16 19 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 20 H 0.04 2.01 8.05 -2.39 -0.02 1.99 16 21 H 0.05 2.27 7.57 -2.39 -0.02 2.26 16 22 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 23 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.06 1.72 7.48 -2.39 -0.02 1.70 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.10 4.01 7.68 -2.39 -0.02 4.00 16 28 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -56.93 255.03 0.66 -56.27 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.10 Total: 7.52 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 2.84 Total: -20.54 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -3.90 Total: -76.13 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -10.89 SS G_CDS: -1.40 Total: -12.29 kcal Total: -56.93 0.66 -56.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.321 kcal (2) G-P(sol) polarization free energy of solvation -56.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds