Wall clock time and date at job start Mon Mar 30 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47215 * 270.00400 * 3 2 1 5 5 H 1.48507 * 109.46902 * 30.00298 * 3 2 1 6 6 H 1.48497 * 109.47098 * 150.00309 * 3 2 1 7 7 C 1.37880 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99443 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00341 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.46053 * 60.95818 * 9 7 2 11 11 C 1.54378 * 110.40894 * 298.54912 * 9 7 2 12 12 C 1.54263 * 105.14898 * 217.41845 * 11 9 7 13 13 C 1.54385 * 105.06130 * 359.94766 * 12 11 9 14 14 N 1.48569 * 104.58899 * 23.85279 * 13 12 11 15 15 C 1.46900 * 110.99448 * 200.95857 * 14 13 12 16 16 C 1.53042 * 113.15278 * 280.74356 * 15 14 13 17 17 S 1.81495 * 89.86314 * 211.87123 * 16 15 14 18 18 C 1.53048 * 113.14762 * 180.31600 * 15 14 13 19 19 H 0.97006 * 119.99438 * 359.97438 * 1 2 3 20 20 H 1.09002 * 110.32595 * 98.47441 * 11 9 7 21 21 H 1.08998 * 110.32427 * 336.36218 * 11 9 7 22 22 H 1.09000 * 110.32756 * 118.84520 * 12 11 9 23 23 H 1.09002 * 110.32502 * 240.95340 * 12 11 9 24 24 H 1.08990 * 110.41189 * 142.62903 * 13 12 11 25 25 H 1.08996 * 110.41178 * 264.95909 * 13 12 11 26 26 H 1.09000 * 112.49446 * 50.53660 * 15 14 13 27 27 H 1.08998 * 113.14990 * 327.11723 * 16 15 14 28 28 H 1.09003 * 113.14352 * 96.59624 * 16 15 14 29 29 H 1.08996 * 113.14819 * 263.41011 * 18 15 14 30 30 H 1.09000 * 113.14846 * 32.89443 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6308 -2.5811 -0.8931 11 6 0.3835 -2.6199 1.2707 12 6 0.4617 -4.1073 1.6724 13 6 1.3694 -4.7627 0.6093 14 7 2.1947 -3.6456 0.0818 15 6 2.7410 -3.9743 -1.2416 16 6 3.9669 -4.8882 -1.1765 17 16 4.6296 -4.0985 -2.6702 18 6 3.6075 -2.8578 -1.8290 19 1 -0.4849 0.8401 0.0004 20 1 -0.6474 -2.3402 1.0536 21 1 0.7863 -1.9916 2.0651 22 1 0.9046 -4.2092 2.6631 23 1 -0.5310 -4.5571 1.6541 24 1 2.0043 -5.5212 1.0670 25 1 0.7673 -5.2016 -0.1862 26 1 1.9764 -4.3313 -1.9316 27 1 4.5820 -4.7178 -0.2929 28 1 3.7244 -5.9412 -1.3196 29 1 3.0642 -2.2114 -2.5182 30 1 4.1533 -2.2954 -1.0714 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:28 Heat of formation + Delta-G solvation = 24.514380 kcal Electronic energy + Delta-G solvation = -12832.488838 eV Core-core repulsion = 10754.440050 eV Total energy + Delta-G solvation = -2078.048788 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.43767 -34.84748 -32.62614 -29.05083 -28.37430 -25.60508 -24.38790 -21.32115 -19.79423 -19.36182 -16.84989 -15.84579 -15.25581 -14.73380 -14.57296 -13.82753 -13.25038 -12.55782 -12.35456 -12.25592 -11.87840 -11.53517 -11.20769 -11.03928 -10.78799 -10.65662 -10.39130 -10.15370 -9.84263 -9.63787 -9.47291 -8.97443 -8.48119 -7.59668 -7.43444 -6.08214 -4.09303 2.20711 2.42765 3.28086 3.35615 3.39075 4.36634 4.81862 4.87590 5.25267 5.39455 5.53215 5.62308 5.71102 5.85088 5.95050 5.99349 6.22604 6.26593 6.45274 6.48548 6.61688 6.99138 7.05423 7.26700 7.50036 7.75577 7.95632 8.07280 8.41261 8.94199 9.54530 11.01616 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.013067 C = 0.009181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.575786 B = 2142.349812 C = 3048.914090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.066 0.934 9 C 0.202 3.798 10 H 0.010 0.990 11 C -0.095 4.095 12 C -0.130 4.130 13 C 0.033 3.967 14 N -0.497 5.497 15 C 0.076 3.924 16 C -0.059 4.059 17 S -0.351 6.351 18 C -0.035 4.035 19 H 0.261 0.739 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -7.233 0.069 7.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.084 0.916 9 C 0.097 3.903 10 H 0.028 0.972 11 C -0.134 4.134 12 C -0.168 4.168 13 C -0.095 4.095 14 N -0.222 5.222 15 C -0.036 4.036 16 C -0.208 4.208 17 S -0.127 6.127 18 C -0.183 4.183 19 H 0.070 0.930 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.927 -7.210 -0.770 8.246 hybrid contribution -0.926 0.923 0.304 1.343 sum 3.001 -6.287 -0.466 6.982 Atomic orbital electron populations 1.69972 1.05894 1.26662 1.50439 1.24936 0.94841 0.99066 0.95243 0.86585 0.79939 0.83386 0.78093 1.20759 1.21297 1.19743 1.21036 0.93286 0.89109 1.50416 0.91585 1.20241 0.88690 0.87943 0.93477 0.97192 1.22210 1.00349 0.91562 0.99280 1.22402 0.97623 0.98728 0.98075 1.22989 0.94907 0.94551 0.97080 1.65767 1.32935 1.04798 1.18742 1.22951 0.95024 0.92898 0.92686 1.24374 0.98405 1.02087 0.95960 1.88716 1.71249 1.20158 1.32556 1.24469 0.96155 0.98194 0.99440 0.92974 0.92202 0.92165 0.92456 0.93053 0.91743 0.95100 0.90979 0.87362 0.89794 0.88625 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 12.36 55.43 0.68 -23.81 16 2 C 0.06 1.61 5.33 -17.82 -0.09 1.52 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.50 -12.77 7.41 -34.44 -0.26 -13.02 16 8 H 0.07 1.68 5.96 -52.48 -0.31 1.37 16 9 C 0.20 4.76 2.16 -67.14 -0.14 4.61 16 10 H 0.01 0.27 8.00 -51.93 -0.42 -0.15 16 11 C -0.09 -2.13 5.56 -25.35 -0.14 -2.27 16 12 C -0.13 -2.34 7.00 -25.34 -0.18 -2.52 16 13 C 0.03 0.58 6.38 -2.17 -0.01 0.56 16 14 N -0.50 -9.88 5.01 -227.88 -1.14 -11.02 16 15 C 0.08 1.36 2.67 -67.67 -0.18 1.18 16 16 C -0.06 -0.92 7.62 37.18 0.28 -0.64 16 17 S -0.35 -6.04 24.80 -107.50 -2.67 -8.70 16 18 C -0.03 -0.65 5.93 37.18 0.22 -0.43 16 19 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 20 H 0.06 1.42 7.95 -51.93 -0.41 1.01 16 21 H 0.06 1.45 7.85 -51.93 -0.41 1.04 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.03 0.52 7.91 -51.93 -0.41 0.11 16 26 H 0.07 1.31 8.02 -51.93 -0.42 0.89 16 27 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 30 H 0.12 2.31 6.58 -51.93 -0.34 1.97 16 LS Contribution 252.51 15.07 3.81 3.81 Total: -1.00 -26.38 252.51 -9.23 -35.61 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.39 Total: -0.51 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.50 Total: -11.01 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.46 Total: -34.83 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -2.67 Total: -8.70 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.38 -9.23 -35.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.125 kcal (2) G-P(sol) polarization free energy of solvation -26.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds