Wall clock time and date at job start Mon Mar 30 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47215 * 270.00400 * 3 2 1 5 5 H 1.48507 * 109.46902 * 30.00298 * 3 2 1 6 6 H 1.48497 * 109.47098 * 150.00309 * 3 2 1 7 7 C 1.37880 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99443 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00341 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.46053 * 60.95818 * 9 7 2 11 11 C 1.54378 * 110.40894 * 298.54912 * 9 7 2 12 12 C 1.54263 * 105.14898 * 217.41845 * 11 9 7 13 13 C 1.54385 * 105.06130 * 359.94766 * 12 11 9 14 14 N 1.48569 * 104.58899 * 23.85279 * 13 12 11 15 15 C 1.46900 * 110.99448 * 200.95857 * 14 13 12 16 16 C 1.53042 * 113.15278 * 280.74356 * 15 14 13 17 17 S 1.81495 * 89.86314 * 211.87123 * 16 15 14 18 18 C 1.53048 * 113.14762 * 180.31600 * 15 14 13 19 19 H 0.97006 * 119.99438 * 359.97438 * 1 2 3 20 20 H 1.09002 * 110.32595 * 98.47441 * 11 9 7 21 21 H 1.08998 * 110.32427 * 336.36218 * 11 9 7 22 22 H 1.09000 * 110.32756 * 118.84520 * 12 11 9 23 23 H 1.09002 * 110.32502 * 240.95340 * 12 11 9 24 24 H 1.08990 * 110.41189 * 142.62903 * 13 12 11 25 25 H 1.08996 * 110.41178 * 264.95909 * 13 12 11 26 26 H 1.09000 * 112.49446 * 50.53660 * 15 14 13 27 27 H 1.08998 * 113.14990 * 327.11723 * 16 15 14 28 28 H 1.09003 * 113.14352 * 96.59624 * 16 15 14 29 29 H 1.08996 * 113.14819 * 263.41011 * 18 15 14 30 30 H 1.09000 * 113.14846 * 32.89443 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6308 -2.5811 -0.8931 11 6 0.3835 -2.6199 1.2707 12 6 0.4617 -4.1073 1.6724 13 6 1.3694 -4.7627 0.6093 14 7 2.1947 -3.6456 0.0818 15 6 2.7410 -3.9743 -1.2416 16 6 3.9669 -4.8882 -1.1765 17 16 4.6296 -4.0985 -2.6702 18 6 3.6075 -2.8578 -1.8290 19 1 -0.4849 0.8401 0.0004 20 1 -0.6474 -2.3402 1.0536 21 1 0.7863 -1.9916 2.0651 22 1 0.9046 -4.2092 2.6631 23 1 -0.5310 -4.5571 1.6541 24 1 2.0043 -5.5212 1.0670 25 1 0.7673 -5.2016 -0.1862 26 1 1.9764 -4.3313 -1.9316 27 1 4.5820 -4.7178 -0.2929 28 1 3.7244 -5.9412 -1.3196 29 1 3.0642 -2.2114 -2.5182 30 1 4.1533 -2.2954 -1.0714 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261013615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:27 Heat of formation + Delta-G solvation = 8.657301 kcal Electronic energy + Delta-G solvation = -12833.176452 eV Core-core repulsion = 10754.440050 eV Total energy + Delta-G solvation = -2078.736402 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00849 -36.36462 -34.56734 -30.60630 -30.15730 -27.00885 -26.25789 -22.88232 -21.32360 -21.04927 -18.63936 -17.42501 -16.85031 -16.40991 -16.18878 -15.40459 -14.88947 -14.15577 -13.91287 -13.75856 -13.51606 -13.03246 -12.88801 -12.79501 -12.51741 -12.39854 -12.02828 -11.74769 -11.35978 -11.33561 -11.06280 -10.81079 -10.47985 -9.21103 -8.82384 -8.10590 -6.16183 0.85473 1.01085 1.42167 1.44794 1.53493 2.43914 3.20679 3.32760 3.46141 4.00811 4.12192 4.12737 4.36432 4.48406 4.53091 4.55017 4.74809 4.82624 4.88025 4.99685 5.12434 5.28147 5.38183 5.52191 5.70262 5.77869 6.14388 6.38411 6.53611 6.93730 7.50586 8.98795 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.013067 C = 0.009181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.575786 B = 2142.349812 C = 3048.914090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.948 3.052 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.204 3.796 10 H -0.024 1.024 11 C -0.091 4.091 12 C -0.122 4.122 13 C 0.034 3.966 14 N -0.501 5.501 15 C 0.073 3.927 16 C -0.040 4.040 17 S -0.348 6.348 18 C -0.040 4.040 19 H 0.259 0.741 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.097 0.903 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 -8.836 0.494 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.774 3.226 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.097 3.903 10 H -0.006 1.006 11 C -0.131 4.131 12 C -0.160 4.160 13 C -0.094 4.094 14 N -0.227 5.227 15 C -0.038 4.038 16 C -0.188 4.188 17 S -0.124 6.124 18 C -0.188 4.188 19 H 0.068 0.932 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.994 -8.831 -0.344 10.151 hybrid contribution -1.240 1.385 0.140 1.864 sum 3.754 -7.445 -0.204 8.341 Atomic orbital electron populations 1.70088 1.07097 1.27075 1.51890 1.25621 0.95507 1.01992 0.95391 0.85706 0.78912 0.79992 0.77969 1.20591 1.21343 1.19171 1.21324 0.93328 0.90280 1.49174 0.91787 1.20018 0.88959 0.88910 0.92445 1.00606 1.22010 0.98364 0.94655 0.98026 1.22364 0.99328 0.95182 0.99085 1.23116 0.95133 0.94121 0.97041 1.65698 1.32308 1.04804 1.19858 1.23009 0.95712 0.93339 0.91783 1.24290 0.96408 1.02944 0.95173 1.88724 1.70789 1.19400 1.33467 1.24342 0.96632 0.98690 0.99131 0.93226 0.94599 0.94597 0.90896 0.91045 0.88513 0.94251 0.91109 0.86588 0.86880 0.90553 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.06 12.36 21.45 0.27 -51.79 16 2 C 0.01 0.74 5.33 84.65 0.45 1.19 16 3 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.50 -26.07 7.41 25.60 0.19 -25.88 16 8 H 0.06 3.28 5.96 -2.91 -0.02 3.27 16 9 C 0.20 9.67 2.16 44.28 0.10 9.77 16 10 H -0.02 -1.27 8.00 -2.39 -0.02 -1.29 16 11 C -0.09 -4.13 5.56 31.49 0.18 -3.96 16 12 C -0.12 -4.10 7.00 31.49 0.22 -3.88 16 13 C 0.03 1.07 6.38 86.45 0.55 1.62 16 14 N -0.50 -19.19 5.01 -874.86 -4.38 -23.57 16 15 C 0.07 2.50 2.67 44.95 0.12 2.62 16 16 C -0.04 -1.11 7.62 72.00 0.55 -0.56 16 17 S -0.35 -11.31 24.80 -56.49 -1.40 -12.71 16 18 C -0.04 -1.47 5.93 72.00 0.43 -1.04 16 19 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 20 H 0.04 1.74 7.95 -2.39 -0.02 1.73 16 21 H 0.04 1.75 7.85 -2.39 -0.02 1.73 16 22 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.04 1.19 7.91 -2.39 -0.02 1.17 16 26 H 0.07 2.48 8.02 -2.39 -0.02 2.46 16 27 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.11 4.13 6.58 -2.39 -0.02 4.12 16 Total: -1.00 -56.79 252.51 0.39 -56.40 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.11 Total: 6.84 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 2.78 Total: -20.12 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -4.12 Total: -75.36 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -11.31 SS G_CDS: -1.40 Total: -12.71 kcal Total: -56.79 0.39 -56.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.054 kcal (2) G-P(sol) polarization free energy of solvation -56.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds