Wall clock time and date at job start Mon Mar 30 2020 02:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86800 * 119.99738 * 2 1 4 4 H 1.48504 * 109.46977 * 239.99849 * 3 2 1 5 5 H 1.48500 * 109.47438 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47042 * 120.00061 * 3 2 1 7 7 C 1.37875 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99990 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50853 * 300.09077 * 9 7 2 11 11 C 1.53105 * 109.54263 * 60.19464 * 9 7 2 12 12 O 1.43096 * 109.28474 * 176.80552 * 11 9 7 13 13 C 1.43019 * 113.68493 * 301.36453 * 12 11 9 14 14 C 1.53096 * 109.29890 * 58.64714 * 13 12 11 15 15 N 1.47012 * 109.50676 * 180.02562 * 9 7 2 16 16 C 1.46890 * 111.00345 * 57.62899 * 15 9 7 17 17 C 1.54032 * 113.82153 * 160.05900 * 16 15 9 18 18 O 1.44445 * 85.42769 * 223.24184 * 17 16 15 19 19 C 1.44169 * 93.38267 * 24.08542 * 18 17 16 20 20 H 0.97000 * 119.99806 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.50699 * 296.74501 * 11 9 7 22 22 H 1.09001 * 109.50068 * 56.86853 * 11 9 7 23 23 H 1.08998 * 109.50356 * 298.68227 * 13 12 11 24 24 H 1.09004 * 109.49848 * 178.60221 * 13 12 11 25 25 H 1.08996 * 109.50612 * 63.06231 * 14 13 12 26 26 H 1.09000 * 109.50567 * 183.19505 * 14 13 12 27 27 H 1.08997 * 113.00109 * 291.88951 * 16 15 9 28 28 H 1.09004 * 113.85926 * 337.34667 * 17 16 15 29 29 H 1.09000 * 113.86695 * 109.04804 * 17 16 15 30 30 H 1.09001 * 113.87127 * 221.77306 * 19 18 17 31 31 H 1.08997 * 113.86493 * 90.06111 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6227 -2.5566 0.8892 11 6 0.3745 -2.5843 -1.2518 12 8 -0.2809 -3.8560 -1.2842 13 6 0.6199 -4.9668 -1.2845 14 6 1.4989 -4.9057 -0.0326 15 7 2.2058 -3.6171 0.0018 16 6 3.1051 -3.5402 1.1606 17 6 3.7872 -4.8768 1.5086 18 8 3.4822 -4.5425 2.8804 19 6 2.3865 -3.6793 2.5160 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3723 -1.7907 -1.2280 22 1 0.9967 -2.4730 -2.1398 23 1 1.2491 -4.9248 -2.1736 24 1 0.0510 -5.8966 -1.2849 25 1 0.8745 -5.0017 0.8556 26 1 2.2248 -5.7185 -0.0576 27 1 3.7920 -2.6953 1.1114 28 1 3.2542 -5.7530 1.1393 29 1 4.8538 -4.8989 1.2853 30 1 2.3446 -2.7536 3.0900 31 1 1.4250 -4.1891 2.4550 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261016264.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:22 Heat of formation + Delta-G solvation = -61.039662 kcal Electronic energy + Delta-G solvation = -15246.849432 eV Core-core repulsion = 12722.337872 eV Total energy + Delta-G solvation = -2524.511561 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.83244 -39.60696 -36.15211 -34.89398 -31.72451 -29.98529 -27.62353 -27.39982 -26.35535 -24.08219 -22.11569 -20.11359 -18.67190 -17.91053 -17.35169 -17.03563 -16.58332 -16.45752 -15.80204 -15.45507 -15.43957 -14.75285 -14.11354 -13.76810 -13.44979 -12.90801 -12.74964 -12.59296 -12.50426 -12.29368 -12.09915 -11.90117 -11.46130 -10.99409 -10.75604 -10.55632 -10.26901 -9.00935 -8.19338 -6.31163 1.43389 1.44226 1.52099 2.38534 2.67223 3.02018 3.06116 3.30547 3.56551 4.00661 4.11415 4.17860 4.18759 4.40120 4.51591 4.60297 4.65824 4.76354 4.87581 4.93251 4.99135 5.10265 5.15185 5.30158 5.50581 5.63260 5.95006 6.18475 6.40506 6.60388 6.81911 7.38655 8.87769 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.013400 C = 0.009783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.320268 B = 2089.070992 C = 2861.405373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.199 3.801 10 H -0.024 1.024 11 C 0.080 3.920 12 O -0.420 6.420 13 C 0.059 3.941 14 C 0.008 3.992 15 N -0.532 5.532 16 C 0.038 3.962 17 C 0.036 3.964 18 O -0.398 6.398 19 C 0.007 3.993 20 H 0.266 0.734 21 H 0.094 0.906 22 H 0.029 0.971 23 H 0.056 0.944 24 H 0.119 0.881 25 H 0.026 0.974 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -8.280 -0.190 9.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.082 0.918 9 C 0.092 3.908 10 H -0.007 1.007 11 C 0.003 3.997 12 O -0.339 6.339 13 C -0.018 4.018 14 C -0.120 4.120 15 N -0.258 5.258 16 C -0.071 4.071 17 C -0.040 4.040 18 O -0.317 6.317 19 C -0.072 4.072 20 H 0.075 0.925 21 H 0.112 0.888 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.136 0.864 25 H 0.044 0.956 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.674 -8.218 -0.375 9.462 hybrid contribution -0.218 1.244 0.700 1.444 sum 4.457 -6.974 0.325 8.283 Atomic orbital electron populations 1.69969 1.07234 1.27875 1.50815 1.25735 0.95658 1.02559 0.94376 0.85541 0.78251 0.78569 0.78900 1.19473 1.21041 1.19697 1.21239 0.93385 0.90298 1.51178 0.91838 1.19527 0.89418 0.88966 0.92848 1.00695 1.22784 0.96473 0.83484 0.96948 1.87894 1.35157 1.15779 1.95106 1.22816 0.92278 0.90051 0.96611 1.23059 0.97501 0.93356 0.98070 1.62149 1.20511 1.02558 1.40567 1.24868 0.95468 0.99437 0.87367 1.24632 1.02799 0.96571 0.79977 1.89611 1.48394 1.66765 1.26903 1.24446 0.91170 0.94026 0.97531 0.92515 0.88812 0.95289 0.92540 0.86357 0.95580 0.86993 0.87940 0.87886 0.86769 0.90161 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.60 11.38 21.45 0.24 -51.36 16 2 C 0.02 0.87 5.31 84.65 0.45 1.32 16 3 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.52 -27.56 8.02 25.60 0.21 -27.36 16 8 H 0.06 3.30 6.64 -2.91 -0.02 3.28 16 9 C 0.20 9.88 1.74 44.18 0.08 9.96 16 10 H -0.02 -1.37 7.53 -2.39 -0.02 -1.39 16 11 C 0.08 3.96 6.03 72.02 0.43 4.39 16 12 O -0.42 -18.57 10.84 -148.98 -1.61 -20.19 16 13 C 0.06 1.97 7.01 72.01 0.50 2.47 16 14 C 0.01 0.26 4.74 86.31 0.41 0.67 16 15 N -0.53 -21.51 4.73 -885.20 -4.19 -25.70 16 16 C 0.04 1.41 3.72 45.62 0.17 1.57 16 17 C 0.04 1.04 8.49 72.29 0.61 1.65 16 18 O -0.40 -13.81 12.46 -148.98 -1.86 -15.67 16 19 C 0.01 0.26 7.76 72.30 0.56 0.82 16 20 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 21 H 0.09 5.18 6.19 -2.39 -0.01 5.17 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 25 H 0.03 0.92 6.46 -2.39 -0.02 0.90 16 26 H 0.11 2.87 5.80 -2.39 -0.01 2.85 16 27 H 0.10 4.08 6.89 -2.39 -0.02 4.06 16 28 H 0.10 2.52 5.40 -2.38 -0.01 2.51 16 29 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.07 2.71 6.43 -2.39 -0.02 2.70 16 Total: -1.00 -60.18 243.44 -0.84 -61.02 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.13 Total: 12.05 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 3.42 Total: -4.50 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.94 Total: -77.05 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -3.47 Total: -35.85 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -60.18 -0.84 -61.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016264.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.025 kcal (2) G-P(sol) polarization free energy of solvation -60.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds