Wall clock time and date at job start Mon Mar 30 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 C 1.53002 * 109.47535 * 120.00205 * 2 1 3 5 5 H 1.08999 * 110.62053 * 186.28297 * 4 2 1 6 6 C 1.54089 * 110.45437 * 309.17058 * 4 2 1 7 7 O 1.45706 * 104.00935 * 118.89262 * 6 4 2 8 8 C 1.33772 * 109.47299 * 359.75449 * 7 6 4 9 9 O 1.21513 * 123.06897 * 179.97438 * 8 7 6 10 10 N 1.34003 * 113.85859 * 359.97438 * 8 7 6 11 11 C 1.46499 * 125.55597 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47165 * 84.22035 * 11 10 8 13 13 H 1.07996 * 119.99993 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00042 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00315 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00016 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47250 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.46948 * 300.00169 * 16 14 12 19 19 H 1.48502 * 109.46738 * 60.00116 * 16 14 12 20 20 H 1.08999 * 109.46623 * 306.28864 * 1 2 3 21 21 H 1.08993 * 109.47012 * 66.29520 * 1 2 3 22 22 H 1.09000 * 109.46714 * 186.29789 * 1 2 3 23 23 H 1.09003 * 109.46876 * 240.00385 * 2 1 3 24 24 H 1.09003 * 109.47244 * 54.99062 * 3 2 1 25 25 H 1.09002 * 109.46789 * 174.98837 * 3 2 1 26 26 H 1.08999 * 109.47311 * 294.98522 * 3 2 1 27 27 H 1.08995 * 110.73070 * 0.15942 * 6 4 2 28 28 H 1.09000 * 110.43176 * 237.47830 * 6 4 2 29 29 H 1.08998 * 109.47728 * 324.21725 * 11 10 8 30 30 H 1.09004 * 109.47092 * 204.21138 * 11 10 8 31 31 H 0.97008 * 120.00016 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1241 -0.6365 1.3257 6 6 1.3599 -0.1579 2.5118 7 8 0.6550 -1.3027 3.0734 8 6 0.8565 -2.3744 2.2986 9 8 0.3800 -3.4659 2.5397 10 7 1.6318 -2.1343 1.2323 11 6 2.0155 -3.1200 0.2188 12 6 0.9264 -3.2250 -0.8176 13 1 0.0372 -2.6185 -0.7297 14 6 1.0653 -4.0953 -1.8778 15 7 2.1484 -4.8336 -1.9851 16 14 -0.2850 -4.2260 -3.1620 17 1 0.1040 -5.2251 -4.1895 18 1 -1.5487 -4.6538 -2.5098 19 1 -0.4840 -2.9034 -3.8073 20 1 -0.3632 0.6082 0.8284 21 1 -0.3633 0.4131 -0.9409 22 1 -0.3633 -1.0215 0.1127 23 1 1.8933 -0.5138 -0.8901 24 1 1.6052 1.9816 0.8417 25 1 3.1263 1.4438 0.0898 26 1 1.7518 1.9298 -0.9315 27 1 0.6569 0.6332 2.2510 28 1 2.1072 0.2125 3.2135 29 1 2.1610 -4.0908 0.6926 30 1 2.9434 -2.8066 -0.2599 31 1 2.8494 -4.7661 -1.3181 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261059800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:09 Heat of formation + Delta-G solvation = -82.763178 kcal Electronic energy + Delta-G solvation = -15152.229645 eV Core-core repulsion = 12626.776082 eV Total energy + Delta-G solvation = -2525.453563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.13363 -36.81679 -35.99930 -33.96955 -32.48625 -28.63846 -26.98560 -26.77227 -24.02427 -23.25791 -20.36189 -19.55865 -17.35558 -16.79628 -16.19728 -15.84747 -14.78486 -14.20775 -13.89996 -13.71143 -13.46276 -13.17666 -12.63821 -12.34236 -12.07557 -11.85310 -11.50727 -11.23259 -10.91702 -10.69081 -10.66090 -10.33332 -10.12937 -10.12264 -9.71850 -9.19846 -8.45258 -7.84095 -6.44498 -4.17652 3.24816 3.39899 3.44953 3.52390 3.61826 4.06871 4.48842 4.51952 4.83829 5.03499 5.21433 5.30308 5.30556 5.37782 5.61304 5.77790 5.86122 5.96664 6.03731 6.11967 6.33523 6.63443 6.68471 6.81351 7.06341 7.32194 7.91615 8.19154 8.37570 8.70594 8.89710 9.51130 10.92302 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.011916 C = 0.010067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.666753 B = 2349.304626 C = 2780.731268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.145 4.145 4 C 0.101 3.899 5 H 0.089 0.911 6 C 0.040 3.960 7 O -0.344 6.344 8 C 0.634 3.366 9 O -0.528 6.528 10 N -0.600 5.600 11 C 0.266 3.734 12 C -0.608 4.608 13 H 0.060 0.940 14 C 0.022 3.978 15 N -0.908 5.908 16 Si 1.069 2.931 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.287 1.287 20 H 0.045 0.955 21 H 0.055 0.945 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.032 0.968 30 H 0.029 0.971 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 13.244 3.737 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.004 4.004 5 H 0.107 0.893 6 C -0.035 4.035 7 O -0.255 6.255 8 C 0.387 3.613 9 O -0.413 6.413 10 N -0.346 5.346 11 C 0.148 3.852 12 C -0.647 4.647 13 H 0.078 0.922 14 C -0.182 4.182 15 N -0.544 5.544 16 Si 0.897 3.103 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.214 1.214 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.091 0.909 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.286 11.873 2.649 12.169 hybrid contribution 0.558 0.928 1.304 1.695 sum 0.844 12.802 3.953 13.425 Atomic orbital electron populations 1.21949 0.94785 1.03253 1.00773 1.21366 0.96845 0.95218 0.98477 1.21853 1.00816 0.95807 1.01831 1.22316 0.99583 0.83221 0.95296 0.89337 1.24366 0.96560 0.88352 0.94220 1.87183 1.68925 1.20015 1.49368 1.18486 0.79429 0.83802 0.79579 1.90993 1.54738 1.20546 1.75057 1.48391 1.50570 1.09873 1.25736 1.19203 0.96034 0.85416 0.84533 1.22327 1.05443 1.27118 1.09766 0.92175 1.25788 1.00793 0.92494 0.99169 1.70823 1.07561 1.38809 1.37205 0.83530 0.74768 0.76345 0.75650 1.20664 1.21296 1.21367 0.93569 0.92628 0.90917 0.88621 0.92941 0.92644 0.92240 0.87882 0.88780 0.95035 0.95291 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.59 37.16 0.32 -2.07 16 2 C -0.10 -1.49 2.65 -90.62 -0.24 -1.73 16 3 C -0.15 -1.56 8.98 37.16 0.33 -1.23 16 4 C 0.10 1.59 3.23 -67.04 -0.22 1.38 16 5 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 6 C 0.04 0.55 6.94 37.73 0.26 0.81 16 7 O -0.34 -6.62 11.09 -37.83 -0.42 -7.03 16 8 C 0.63 14.75 8.67 53.71 0.47 15.21 16 9 O -0.53 -14.63 17.63 -19.12 -0.34 -14.97 16 10 N -0.60 -12.94 2.05 -172.65 -0.35 -13.29 16 11 C 0.27 6.68 4.67 -5.19 -0.02 6.66 16 12 C -0.61 -16.66 9.18 -34.44 -0.32 -16.98 16 13 H 0.06 1.66 5.73 -52.49 -0.30 1.36 16 14 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 15 N -0.91 -26.88 13.65 55.43 0.76 -26.12 16 16 Si 1.07 25.09 29.90 -169.99 -5.08 20.01 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 20 H 0.05 0.62 6.26 -51.93 -0.33 0.30 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.07 1.46 5.35 -51.93 -0.28 1.18 16 23 H 0.10 1.71 7.89 -51.93 -0.41 1.30 16 24 H 0.05 0.47 7.27 -51.93 -0.38 0.10 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 1.19 5.18 -51.93 -0.27 0.92 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.03 0.88 7.92 -51.93 -0.41 0.47 16 30 H 0.03 0.71 8.01 -51.93 -0.42 0.30 16 31 H 0.27 7.81 7.22 -40.82 -0.29 7.51 16 LS Contribution 255.55 15.07 3.85 3.85 Total: -1.00 -32.75 255.55 -5.09 -37.84 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.99 Total: -2.87 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 0.49 Total: 2.58 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.40 Total: -39.42 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.76 Total: -22.00 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.75 -5.09 -37.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.919 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds