Wall clock time and date at job start Mon Mar 30 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 C 1.53002 * 109.47535 * 120.00205 * 2 1 3 5 5 H 1.08999 * 110.62053 * 186.28297 * 4 2 1 6 6 C 1.54089 * 110.45437 * 309.17058 * 4 2 1 7 7 O 1.45706 * 104.00935 * 118.89262 * 6 4 2 8 8 C 1.33772 * 109.47299 * 359.75449 * 7 6 4 9 9 O 1.21513 * 123.06897 * 179.97438 * 8 7 6 10 10 N 1.34003 * 113.85859 * 359.97438 * 8 7 6 11 11 C 1.46499 * 125.55597 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47165 * 84.22035 * 11 10 8 13 13 H 1.07996 * 119.99993 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00042 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00315 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00016 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47250 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.46948 * 300.00169 * 16 14 12 19 19 H 1.48502 * 109.46738 * 60.00116 * 16 14 12 20 20 H 1.08999 * 109.46623 * 306.28864 * 1 2 3 21 21 H 1.08993 * 109.47012 * 66.29520 * 1 2 3 22 22 H 1.09000 * 109.46714 * 186.29789 * 1 2 3 23 23 H 1.09003 * 109.46876 * 240.00385 * 2 1 3 24 24 H 1.09003 * 109.47244 * 54.99062 * 3 2 1 25 25 H 1.09002 * 109.46789 * 174.98837 * 3 2 1 26 26 H 1.08999 * 109.47311 * 294.98522 * 3 2 1 27 27 H 1.08995 * 110.73070 * 0.15942 * 6 4 2 28 28 H 1.09000 * 110.43176 * 237.47830 * 6 4 2 29 29 H 1.08998 * 109.47728 * 324.21725 * 11 10 8 30 30 H 1.09004 * 109.47092 * 204.21138 * 11 10 8 31 31 H 0.97008 * 120.00016 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1241 -0.6365 1.3257 6 6 1.3599 -0.1579 2.5118 7 8 0.6550 -1.3027 3.0734 8 6 0.8565 -2.3744 2.2986 9 8 0.3800 -3.4659 2.5397 10 7 1.6318 -2.1343 1.2323 11 6 2.0155 -3.1200 0.2188 12 6 0.9264 -3.2250 -0.8176 13 1 0.0372 -2.6185 -0.7297 14 6 1.0653 -4.0953 -1.8778 15 7 2.1484 -4.8336 -1.9851 16 14 -0.2850 -4.2260 -3.1620 17 1 0.1040 -5.2251 -4.1895 18 1 -1.5487 -4.6538 -2.5098 19 1 -0.4840 -2.9034 -3.8073 20 1 -0.3632 0.6082 0.8284 21 1 -0.3633 0.4131 -0.9409 22 1 -0.3633 -1.0215 0.1127 23 1 1.8933 -0.5138 -0.8901 24 1 1.6052 1.9816 0.8417 25 1 3.1263 1.4438 0.0898 26 1 1.7518 1.9298 -0.9315 27 1 0.6569 0.6332 2.2510 28 1 2.1072 0.2125 3.2135 29 1 2.1610 -4.0908 0.6926 30 1 2.9434 -2.8066 -0.2599 31 1 2.8494 -4.7661 -1.3181 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:09 Heat of formation + Delta-G solvation = -104.784507 kcal Electronic energy + Delta-G solvation = -15153.184562 eV Core-core repulsion = 12626.776082 eV Total energy + Delta-G solvation = -2526.408479 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.69835 -38.52304 -37.58339 -35.75458 -34.35068 -30.13863 -28.60276 -28.03785 -25.44054 -25.18539 -22.12664 -20.85437 -19.33326 -18.28237 -17.92677 -17.38617 -16.29386 -15.90864 -15.66403 -15.42788 -14.74597 -14.70711 -14.07909 -14.02830 -13.55908 -13.12536 -12.97450 -12.84334 -12.54568 -12.42042 -11.97968 -11.93654 -11.68652 -11.61027 -11.40209 -11.07407 -10.61327 -9.68437 -8.68450 -6.43276 1.48907 1.57136 1.58749 1.75746 1.77438 2.52012 2.67687 3.09963 3.30435 3.67716 3.79844 4.03709 4.27994 4.32756 4.42402 4.54461 4.73603 4.79599 4.86518 4.98775 5.05493 5.10720 5.28984 5.34233 5.50341 5.57423 5.78354 6.17767 6.46779 6.52218 7.05969 7.34161 8.67634 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.011916 C = 0.010067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.666753 B = 2349.304626 C = 2780.731268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.135 4.135 4 C 0.091 3.909 5 H 0.116 0.884 6 C 0.040 3.960 7 O -0.346 6.346 8 C 0.632 3.368 9 O -0.589 6.589 10 N -0.603 5.603 11 C 0.278 3.722 12 C -0.611 4.611 13 H 0.055 0.945 14 C -0.026 4.026 15 N -0.932 5.932 16 Si 1.112 2.888 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.261 1.261 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.023 0.977 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.132 0.868 28 H 0.142 0.858 29 H -0.006 1.006 30 H 0.036 0.964 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 16.306 3.827 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.193 4.193 4 C -0.012 4.012 5 H 0.133 0.867 6 C -0.033 4.033 7 O -0.256 6.256 8 C 0.386 3.614 9 O -0.479 6.479 10 N -0.347 5.347 11 C 0.158 3.842 12 C -0.650 4.650 13 H 0.073 0.927 14 C -0.225 4.225 15 N -0.569 5.569 16 Si 0.934 3.066 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.186 1.186 20 H 0.093 0.907 21 H 0.081 0.919 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.160 0.840 29 H 0.012 0.988 30 H 0.053 0.947 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.341 15.020 2.755 15.274 hybrid contribution 0.584 0.077 1.330 1.455 sum 0.926 15.097 4.085 15.667 Atomic orbital electron populations 1.21920 0.95581 1.00656 1.02410 1.21327 0.96115 0.97752 0.96388 1.21790 1.01785 0.92364 1.03358 1.22827 1.01514 0.79774 0.97070 0.86678 1.24929 0.97871 0.86664 0.93851 1.87151 1.69424 1.20330 1.48697 1.18617 0.78933 0.83967 0.79921 1.90928 1.57006 1.23354 1.76596 1.48278 1.50005 1.12054 1.24370 1.18762 0.95781 0.85039 0.84570 1.22570 1.05673 1.26630 1.10092 0.92676 1.27169 1.02001 0.91995 1.01346 1.70931 1.08310 1.40187 1.37452 0.82988 0.72294 0.77622 0.73709 1.20531 1.20953 1.18573 0.90734 0.91898 0.95803 0.92301 0.90221 0.91217 0.91746 0.85064 0.84044 0.98841 0.94651 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 8.59 71.98 0.62 -3.80 16 2 C -0.10 -2.65 2.65 -10.79 -0.03 -2.68 16 3 C -0.14 -2.28 8.98 71.98 0.65 -1.64 16 4 C 0.09 2.64 3.23 45.25 0.15 2.79 16 5 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 6 C 0.04 0.92 6.94 72.35 0.50 1.42 16 7 O -0.35 -12.68 11.09 -47.32 -0.52 -13.20 16 8 C 0.63 29.69 8.67 129.91 1.13 30.82 16 9 O -0.59 -33.98 17.63 19.64 0.35 -33.64 16 10 N -0.60 -26.09 2.05 -931.84 -1.91 -27.99 16 11 C 0.28 14.47 4.67 85.63 0.40 14.87 16 12 C -0.61 -34.40 9.18 25.60 0.24 -34.16 16 13 H 0.06 3.12 5.73 -2.91 -0.02 3.10 16 14 C -0.03 -1.51 5.46 84.65 0.46 -1.05 16 15 N -0.93 -56.47 13.65 21.45 0.29 -56.18 16 16 Si 1.11 50.72 29.90 68.60 2.05 52.77 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 20 H 0.07 1.74 6.26 -2.39 -0.01 1.72 16 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.02 0.93 5.35 -2.39 -0.01 0.92 16 23 H 0.06 2.06 7.89 -2.39 -0.02 2.04 16 24 H 0.08 0.95 7.27 -2.39 -0.02 0.93 16 25 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.13 2.30 5.18 -2.39 -0.01 2.28 16 28 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 29 H -0.01 -0.38 7.92 -2.39 -0.02 -0.39 16 30 H 0.04 1.79 8.01 -2.38 -0.02 1.77 16 31 H 0.26 15.61 7.22 -92.70 -0.67 14.94 16 Total: -1.00 -75.41 255.55 5.59 -69.82 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 1.22 Total: 1.85 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 4.11 Total: 6.57 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -1.61 Total: -84.18 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.18 Total: -46.84 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Total: -75.41 5.59 -69.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.963 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds