Wall clock time and date at job start Mon Mar 30 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46760 * 2 1 4 4 C 1.53001 * 109.47266 * 119.99461 * 2 1 3 5 5 H 1.09007 * 110.49884 * 57.88908 * 4 2 1 6 6 C 1.54093 * 110.69106 * 295.06582 * 4 2 1 7 7 O 1.45706 * 104.00566 * 241.36123 * 6 4 2 8 8 C 1.33775 * 109.47706 * 0.02562 * 7 6 4 9 9 O 1.21511 * 123.07078 * 180.02562 * 8 7 6 10 10 N 1.34010 * 113.85472 * 359.97438 * 8 7 6 11 11 C 1.46494 * 125.55475 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.46900 * 94.92460 * 11 10 8 13 13 H 1.07997 * 120.00089 * 5.03528 * 12 11 10 14 14 C 1.37881 * 120.00046 * 185.04558 * 12 11 10 15 15 N 1.31512 * 120.00016 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99741 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47490 * 90.00372 * 16 14 12 18 18 H 1.48501 * 109.46672 * 210.00184 * 16 14 12 19 19 H 1.48493 * 109.47458 * 329.99672 * 16 14 12 20 20 H 1.08993 * 109.47617 * 299.99679 * 1 2 3 21 21 H 1.08999 * 109.46848 * 60.00349 * 1 2 3 22 22 H 1.09006 * 109.46457 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47617 * 240.00321 * 2 1 3 24 24 H 1.08993 * 109.47011 * 294.10792 * 3 2 1 25 25 H 1.09004 * 109.46657 * 54.10413 * 3 2 1 26 26 H 1.08999 * 109.47063 * 174.10516 * 3 2 1 27 27 H 1.08997 * 110.51968 * 359.97438 * 6 4 2 28 28 H 1.09001 * 110.51928 * 122.73161 * 6 4 2 29 29 H 1.08998 * 109.47406 * 214.91715 * 11 10 8 30 30 H 1.09000 * 109.48084 * 334.92357 * 11 10 8 31 31 H 0.97000 * 120.00169 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6556 -1.7405 1.2853 6 6 1.6458 0.0514 2.5230 7 8 2.9221 0.4010 3.1326 8 6 3.9210 -0.0676 2.3762 9 8 5.0933 0.0851 2.6571 10 7 3.5106 -0.7217 1.2810 11 6 4.3841 -1.3363 0.2784 12 6 4.5705 -2.7964 0.6019 13 1 4.0231 -3.2426 1.4190 14 6 5.4399 -3.5626 -0.1453 15 7 5.6029 -4.8366 0.1373 16 14 6.3863 -2.7908 -1.5588 17 1 7.6788 -2.2588 -1.0573 18 1 6.6444 -3.8173 -2.6004 19 1 5.5882 -1.6831 -2.1427 20 1 -0.3634 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0278 -0.0005 23 1 1.8934 -0.5137 -0.8899 24 1 1.7653 1.9250 -0.9380 25 1 1.5929 1.9859 0.8325 26 1 3.1248 1.4445 0.1055 27 1 1.0860 0.9507 2.2664 28 1 1.0646 -0.5844 3.1910 29 1 3.9308 -1.2378 -0.7079 30 1 5.3527 -0.8363 0.2847 31 1 6.2143 -5.3757 -0.3885 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059801.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:11 Heat of formation + Delta-G solvation = -100.422707 kcal Electronic energy + Delta-G solvation = -14984.247102 eV Core-core repulsion = 12458.027765 eV Total energy + Delta-G solvation = -2526.219338 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.67173 -38.50524 -37.50388 -35.60978 -34.32197 -30.69337 -29.20443 -27.93743 -25.37382 -24.98440 -21.83674 -20.84055 -19.22067 -18.21125 -18.07639 -17.44273 -16.38118 -16.30901 -15.66229 -15.12048 -14.88191 -14.55498 -14.31147 -13.95697 -13.54605 -13.20339 -13.02138 -12.87491 -12.55346 -12.46051 -12.03964 -11.93854 -11.78111 -11.67189 -11.55445 -11.35707 -10.86740 -9.67210 -8.38274 -6.45696 1.31720 1.36979 1.44303 1.62375 1.78007 2.28142 2.67918 2.95968 3.32511 3.67866 3.82872 4.04996 4.28132 4.32070 4.45964 4.57089 4.71104 4.82429 4.89956 5.00040 5.05196 5.11931 5.24462 5.33491 5.40121 5.49713 5.53151 6.16227 6.52667 6.55974 7.04728 7.21618 8.78330 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031389 B = 0.010937 C = 0.009722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.808204 B = 2559.453093 C = 2879.461977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 C -0.149 4.149 4 C 0.091 3.909 5 H 0.096 0.904 6 C 0.041 3.959 7 O -0.345 6.345 8 C 0.633 3.367 9 O -0.587 6.587 10 N -0.602 5.602 11 C 0.256 3.744 12 C -0.550 4.550 13 H 0.033 0.967 14 C 0.017 3.983 15 N -0.940 5.940 16 Si 0.945 3.055 17 H -0.276 1.276 18 H -0.272 1.272 19 H -0.235 1.235 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.141 0.859 28 H 0.128 0.872 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.732 11.532 -3.108 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 C -0.206 4.206 4 C -0.012 4.012 5 H 0.114 0.886 6 C -0.032 4.032 7 O -0.255 6.255 8 C 0.387 3.613 9 O -0.477 6.477 10 N -0.346 5.346 11 C 0.136 3.864 12 C -0.588 4.588 13 H 0.051 0.949 14 C -0.182 4.182 15 N -0.579 5.579 16 Si 0.767 3.233 17 H -0.201 1.201 18 H -0.197 1.197 19 H -0.158 1.158 20 H 0.096 0.904 21 H 0.093 0.907 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.159 0.841 28 H 0.146 0.854 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.060 11.563 -2.825 17.670 hybrid contribution 0.935 -0.566 -0.327 1.141 sum -12.125 10.997 -3.152 16.670 Atomic orbital electron populations 1.21800 0.91088 1.03004 1.03713 1.21412 0.98358 0.96154 0.95968 1.21893 0.99823 0.95554 1.03368 1.22716 0.79339 1.01653 0.97509 0.88633 1.24892 0.82654 1.02883 0.92768 1.87150 1.17626 1.72996 1.47761 1.18625 0.84940 0.77745 0.79994 1.90923 1.15663 1.65471 1.75632 1.48156 1.08113 1.54578 1.23770 1.19212 0.89245 0.90940 0.86956 1.21539 1.26255 0.94284 1.16714 0.94912 1.25808 0.96903 0.95087 1.00397 1.70030 1.37877 1.08020 1.41955 0.85762 0.79501 0.79409 0.78635 1.20140 1.19704 1.15806 0.90445 0.90745 0.91934 0.91176 0.90472 0.90921 0.95618 0.84108 0.85386 0.92107 0.95663 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.00 71.98 0.65 -1.32 16 2 C -0.10 -2.24 2.71 -10.79 -0.03 -2.27 16 3 C -0.15 -3.26 8.66 71.98 0.62 -2.64 16 4 C 0.09 2.67 3.25 45.25 0.15 2.81 16 5 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 6 C 0.04 0.97 6.88 72.35 0.50 1.46 16 7 O -0.34 -12.53 11.09 -47.35 -0.53 -13.05 16 8 C 0.63 28.95 8.67 129.91 1.13 30.08 16 9 O -0.59 -32.52 17.48 19.65 0.34 -32.18 16 10 N -0.60 -25.35 1.88 -931.84 -1.75 -27.10 16 11 C 0.26 12.34 4.74 85.64 0.41 12.75 16 12 C -0.55 -31.87 9.94 25.60 0.25 -31.61 16 13 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 14 C 0.02 0.99 5.47 84.66 0.46 1.46 16 15 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 16 Si 0.94 43.29 27.37 68.60 1.88 45.17 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.24 -9.55 6.69 99.48 0.67 -8.88 16 20 H 0.08 0.78 6.85 -2.39 -0.02 0.76 16 21 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 23 H 0.07 1.82 7.36 -2.39 -0.02 1.81 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.30 6.46 -2.39 -0.02 1.29 16 26 H 0.02 0.73 7.33 -2.39 -0.02 0.71 16 27 H 0.14 2.18 5.18 -2.39 -0.01 2.17 16 28 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.62 6.65 -2.39 -0.02 2.60 16 30 H 0.03 1.30 6.97 -2.39 -0.02 1.28 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -76.47 255.88 5.46 -71.01 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.08 Total: 3.57 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 4.14 Total: 10.71 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.45 Total: -85.23 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.18 Total: -45.23 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -76.47 5.46 -71.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059801.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.411 kcal (2) G-P(sol) polarization free energy of solvation -76.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds