Wall clock time and date at job start Mon Mar 30 2020 02:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48496 * 109.47520 * 270.00443 * 3 2 1 5 5 H 1.48513 * 109.46997 * 29.99986 * 3 2 1 6 6 H 1.48502 * 109.47335 * 149.99638 * 3 2 1 7 7 C 1.37872 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99643 * 184.84301 * 7 2 1 9 9 C 1.50700 * 120.00006 * 4.83740 * 7 2 1 10 10 N 1.46896 * 112.49684 * 84.57773 * 9 7 2 11 11 C 1.48540 * 110.99585 * 292.81744 * 10 9 7 12 12 C 1.54939 * 103.22614 * 159.71963 * 11 10 9 13 13 C 1.54595 * 102.92448 * 322.58766 * 12 11 10 14 14 C 1.47901 * 111.00111 * 50.20756 * 10 9 7 15 15 C 1.53048 * 113.18911 * 214.39496 * 9 7 2 16 16 S 1.81425 * 89.89156 * 82.36394 * 15 9 7 17 17 C 1.53042 * 113.15266 * 314.78812 * 9 7 2 18 18 H 0.96995 * 120.00578 * 0.02562 * 1 2 3 19 19 H 1.09003 * 110.66588 * 278.15389 * 11 10 9 20 20 H 1.08999 * 110.66832 * 41.28346 * 11 10 9 21 21 H 1.08993 * 110.72691 * 204.22230 * 12 11 10 22 22 H 1.09012 * 110.87226 * 81.01152 * 12 11 10 23 23 H 1.08996 * 110.30247 * 263.04161 * 13 12 11 24 24 H 1.08992 * 110.39717 * 140.91642 * 13 12 11 25 25 H 1.09000 * 109.92143 * 333.51524 * 14 10 9 26 26 H 1.09009 * 109.91251 * 94.60939 * 14 10 9 27 27 H 1.09004 * 113.14278 * 197.62339 * 15 9 7 28 28 H 1.09000 * 113.14891 * 327.10696 * 15 9 7 29 29 H 1.08997 * 113.14739 * 32.85433 * 17 9 7 30 30 H 1.09002 * 113.14814 * 162.30170 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0817 -1.1956 0.0784 9 6 1.2552 -2.4967 -0.1112 10 7 0.9634 -2.8608 -1.5041 11 6 -0.0059 -1.9125 -2.1102 12 6 0.2117 -2.1073 -3.6318 13 6 1.7400 -2.3144 -3.7388 14 6 2.1816 -2.7808 -2.3391 15 6 1.9010 -3.6330 0.6851 16 16 1.0871 -3.0349 2.1922 17 6 0.0260 -2.5629 0.7982 18 1 -0.4851 0.8399 -0.0004 19 1 -1.0265 -2.1746 -1.8309 20 1 0.2233 -0.8881 -1.8168 21 1 -0.0966 -1.2187 -4.1825 22 1 -0.3227 -2.9868 -3.9912 23 1 2.2316 -1.3766 -3.9975 24 1 1.9688 -3.0783 -4.4818 25 1 2.8789 -2.0610 -1.9106 26 1 2.6530 -3.7616 -2.4029 27 1 1.5588 -4.6209 0.3765 28 1 2.9878 -3.5622 0.7282 29 1 -0.4576 -1.5959 0.9361 30 1 -0.6779 -3.3441 0.5110 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131857.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:19 Heat of formation + Delta-G solvation = 34.874387 kcal Electronic energy + Delta-G solvation = -13285.861109 eV Core-core repulsion = 11208.261565 eV Total energy + Delta-G solvation = -2077.599544 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.35359 -34.80543 -32.02900 -28.78119 -27.90889 -25.51673 -24.77860 -21.04531 -19.82482 -19.01782 -16.43779 -15.42420 -14.97597 -14.89470 -14.07777 -13.43365 -12.90774 -12.55881 -12.21925 -11.85642 -11.46158 -11.15306 -11.00379 -10.88535 -10.76529 -10.51601 -10.14126 -10.04289 -9.87872 -9.64375 -9.09983 -8.98369 -8.53317 -7.10438 -6.60496 -6.09362 -4.30795 3.06002 3.18822 3.27175 3.31013 3.37706 4.24767 4.97077 5.36508 5.52768 5.64036 5.77467 5.97185 6.26196 6.32932 6.35625 6.51753 6.57358 6.60119 6.62158 6.68582 6.94683 7.00487 7.16206 7.39211 7.58308 7.77840 7.99634 8.16982 8.52332 8.66930 9.33558 10.76642 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.021564 B = 0.019954 C = 0.012775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.131676 B = 1402.906789 C = 2191.316150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.222 3.778 10 N -0.513 5.513 11 C 0.042 3.958 12 C -0.129 4.129 13 C -0.125 4.125 14 C 0.040 3.960 15 C -0.057 4.057 16 S -0.353 6.353 17 C -0.059 4.059 18 H 0.265 0.735 19 H 0.056 0.944 20 H 0.100 0.900 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 -2.402 -4.742 5.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.128 4.128 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.132 3.868 10 N -0.238 5.238 11 C -0.086 4.086 12 C -0.168 4.168 13 C -0.163 4.163 14 C -0.089 4.089 15 C -0.206 4.206 16 S -0.129 6.129 17 C -0.208 4.208 18 H 0.076 0.924 19 H 0.075 0.925 20 H 0.118 0.882 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.165 0.835 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.594 -2.754 -3.250 4.302 hybrid contribution 0.671 1.464 -1.037 1.915 sum 1.264 -1.290 -4.287 4.652 Atomic orbital electron populations 1.69544 1.05771 1.26670 1.50035 1.24880 0.94913 0.99223 0.93759 0.86486 0.80096 0.82805 0.78155 1.20548 1.20966 1.19693 1.20992 0.93477 0.89545 1.49861 0.91888 1.19911 0.90564 0.90560 0.85721 1.65278 1.08438 1.47692 1.02419 1.23371 0.95715 0.99680 0.89851 1.22552 0.95580 0.99879 0.98746 1.22312 0.96465 0.99962 0.97567 1.22604 0.94887 0.99454 0.91932 1.24410 1.02222 1.01764 0.92192 1.88100 1.33732 1.76416 1.14647 1.24875 1.00067 1.06769 0.89044 0.92369 0.92507 0.88238 0.92729 0.92641 0.92585 0.92866 0.91973 0.93042 0.90063 0.91028 0.83472 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.06 8.10 55.43 0.45 -21.61 16 2 C 0.07 1.83 4.31 -17.82 -0.08 1.75 16 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.50 -12.49 5.78 -34.44 -0.20 -12.69 16 8 H 0.06 1.62 7.71 -52.48 -0.40 1.22 16 9 C 0.22 5.15 0.38 -132.71 -0.05 5.10 16 10 N -0.51 -11.11 5.18 -228.24 -1.18 -12.29 16 11 C 0.04 0.89 5.40 -1.89 -0.01 0.88 16 12 C -0.13 -2.31 7.06 -24.87 -0.18 -2.49 16 13 C -0.12 -2.16 6.93 -25.37 -0.18 -2.34 16 14 C 0.04 0.79 6.39 -2.75 -0.02 0.77 16 15 C -0.06 -1.24 7.18 37.18 0.27 -0.97 16 16 S -0.35 -8.26 24.26 -107.50 -2.61 -10.87 16 17 C -0.06 -1.41 6.31 37.18 0.23 -1.17 16 18 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 19 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 20 H 0.10 2.39 4.36 -51.93 -0.23 2.16 16 21 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.33 6.15 -51.93 -0.32 1.01 16 26 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 27 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 28 H 0.07 1.53 8.11 -51.93 -0.42 1.10 16 29 H 0.15 3.82 5.12 -51.93 -0.27 3.56 16 30 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 243.04 15.07 3.66 3.66 Total: -1.00 -25.06 243.04 -9.06 -34.11 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.15 Total: 3.09 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.20 Total: -11.16 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: -0.73 Total: -33.90 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -2.61 Total: -10.87 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -25.06 -9.06 -34.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131857.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.989 kcal (2) G-P(sol) polarization free energy of solvation -25.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds