Wall clock time and date at job start Mon Mar 30 2020 02:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48496 * 109.47520 * 270.00443 * 3 2 1 5 5 H 1.48513 * 109.46997 * 29.99986 * 3 2 1 6 6 H 1.48502 * 109.47335 * 149.99638 * 3 2 1 7 7 C 1.37872 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99643 * 184.84301 * 7 2 1 9 9 C 1.50700 * 120.00006 * 4.83740 * 7 2 1 10 10 N 1.46896 * 112.49684 * 84.57773 * 9 7 2 11 11 C 1.48540 * 110.99585 * 292.81744 * 10 9 7 12 12 C 1.54939 * 103.22614 * 159.71963 * 11 10 9 13 13 C 1.54595 * 102.92448 * 322.58766 * 12 11 10 14 14 C 1.47901 * 111.00111 * 50.20756 * 10 9 7 15 15 C 1.53048 * 113.18911 * 214.39496 * 9 7 2 16 16 S 1.81425 * 89.89156 * 82.36394 * 15 9 7 17 17 C 1.53042 * 113.15266 * 314.78812 * 9 7 2 18 18 H 0.96995 * 120.00578 * 0.02562 * 1 2 3 19 19 H 1.09003 * 110.66588 * 278.15389 * 11 10 9 20 20 H 1.08999 * 110.66832 * 41.28346 * 11 10 9 21 21 H 1.08993 * 110.72691 * 204.22230 * 12 11 10 22 22 H 1.09012 * 110.87226 * 81.01152 * 12 11 10 23 23 H 1.08996 * 110.30247 * 263.04161 * 13 12 11 24 24 H 1.08992 * 110.39717 * 140.91642 * 13 12 11 25 25 H 1.09000 * 109.92143 * 333.51524 * 14 10 9 26 26 H 1.09009 * 109.91251 * 94.60939 * 14 10 9 27 27 H 1.09004 * 113.14278 * 197.62339 * 15 9 7 28 28 H 1.09000 * 113.14891 * 327.10696 * 15 9 7 29 29 H 1.08997 * 113.14739 * 32.85433 * 17 9 7 30 30 H 1.09002 * 113.14814 * 162.30170 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0817 -1.1956 0.0784 9 6 1.2552 -2.4967 -0.1112 10 7 0.9634 -2.8608 -1.5041 11 6 -0.0059 -1.9125 -2.1102 12 6 0.2117 -2.1073 -3.6318 13 6 1.7400 -2.3144 -3.7388 14 6 2.1816 -2.7808 -2.3391 15 6 1.9010 -3.6330 0.6851 16 16 1.0871 -3.0349 2.1922 17 6 0.0260 -2.5629 0.7982 18 1 -0.4851 0.8399 -0.0004 19 1 -1.0265 -2.1746 -1.8309 20 1 0.2233 -0.8881 -1.8168 21 1 -0.0966 -1.2187 -4.1825 22 1 -0.3227 -2.9868 -3.9912 23 1 2.2316 -1.3766 -3.9975 24 1 1.9688 -3.0783 -4.4818 25 1 2.8789 -2.0610 -1.9106 26 1 2.6530 -3.7616 -2.4029 27 1 1.5588 -4.6209 0.3765 28 1 2.9878 -3.5622 0.7282 29 1 -0.4576 -1.5959 0.9361 30 1 -0.6779 -3.3441 0.5110 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131857.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:19 Heat of formation + Delta-G solvation = 20.529434 kcal Electronic energy + Delta-G solvation = -13286.483153 eV Core-core repulsion = 11208.261565 eV Total energy + Delta-G solvation = -2078.221588 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04324 -36.48232 -33.92100 -30.37228 -29.49311 -27.42203 -26.59119 -22.70541 -21.29497 -20.82392 -18.24613 -17.26237 -16.79287 -16.49034 -15.82457 -15.19904 -14.55071 -14.25304 -13.92472 -13.59752 -13.28736 -12.84999 -12.72831 -12.58020 -12.54595 -12.02912 -11.85498 -11.75188 -11.59784 -11.17720 -10.92120 -10.79229 -10.40386 -8.86094 -8.47339 -7.98476 -6.24311 1.26145 1.39397 1.44211 1.49510 1.51287 2.39388 3.08348 3.70142 3.94527 4.14566 4.29704 4.36926 4.54615 4.70824 4.78335 4.85693 4.95367 4.98554 5.16233 5.16266 5.32749 5.46639 5.49678 5.54993 5.78648 5.91915 6.13006 6.47198 6.71293 6.77868 7.40532 8.85226 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.021564 B = 0.019954 C = 0.012775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.131676 B = 1402.906789 C = 2191.316150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.510 4.510 8 H 0.050 0.950 9 C 0.219 3.781 10 N -0.513 5.513 11 C 0.039 3.961 12 C -0.121 4.121 13 C -0.119 4.119 14 C 0.037 3.963 15 C -0.043 4.043 16 S -0.375 6.375 17 C -0.054 4.054 18 H 0.264 0.736 19 H 0.044 0.956 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 -2.889 -6.038 6.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.158 4.158 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.068 0.932 9 C 0.129 3.871 10 N -0.238 5.238 11 C -0.089 4.089 12 C -0.160 4.160 13 C -0.157 4.157 14 C -0.092 4.092 15 C -0.192 4.192 16 S -0.151 6.151 17 C -0.203 4.203 18 H 0.075 0.925 19 H 0.063 0.937 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.144 0.856 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.984 -3.244 -4.555 5.678 hybrid contribution 0.541 1.601 -0.622 1.801 sum 1.525 -1.643 -5.177 5.641 Atomic orbital electron populations 1.69652 1.06302 1.26897 1.50062 1.25342 0.95505 1.01151 0.93761 0.85779 0.78778 0.80310 0.78146 1.19917 1.21155 1.20334 1.21046 0.92897 0.90702 1.50333 0.93225 1.19846 0.90065 0.90409 0.86782 1.65261 1.09356 1.47335 1.01844 1.23264 0.94997 0.98095 0.92550 1.22507 0.96272 1.01184 0.96004 1.22298 0.95785 1.00967 0.96657 1.22682 0.93729 0.99851 0.92927 1.24384 1.02249 1.02080 0.90483 1.88146 1.34430 1.76790 1.15713 1.24782 1.00373 1.05760 0.89373 0.92517 0.93726 0.90859 0.91538 0.91092 0.92413 0.89967 0.94108 0.91450 0.88337 0.90632 0.85582 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.75 8.10 21.45 0.17 -44.58 16 2 C 0.04 2.11 4.31 84.65 0.36 2.48 16 3 Si 0.94 41.07 29.54 68.60 2.03 43.09 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.51 -25.43 5.78 25.60 0.15 -25.28 16 8 H 0.05 2.56 7.71 -2.91 -0.02 2.54 16 9 C 0.22 10.00 0.38 2.81 0.00 10.00 16 10 N -0.51 -21.45 5.18 -876.02 -4.54 -25.99 16 11 C 0.04 1.62 5.40 86.65 0.47 2.09 16 12 C -0.12 -4.01 7.06 31.80 0.22 -3.78 16 13 C -0.12 -3.75 6.93 31.47 0.22 -3.53 16 14 C 0.04 1.37 6.39 86.45 0.55 1.92 16 15 C -0.04 -1.83 7.18 72.00 0.52 -1.31 16 16 S -0.37 -17.34 24.26 -56.49 -1.37 -18.71 16 17 C -0.05 -2.57 6.31 72.00 0.45 -2.12 16 18 H 0.26 12.90 8.31 -92.71 -0.77 12.13 16 19 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 20 H 0.07 3.49 4.36 -2.39 -0.01 3.48 16 21 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.04 1.70 6.15 -2.39 -0.01 1.69 16 26 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 28 H 0.07 3.12 8.11 -2.39 -0.02 3.10 16 29 H 0.13 6.61 5.12 -2.39 -0.01 6.59 16 30 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -51.63 243.04 0.36 -51.28 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.12 Total: 14.44 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 2.95 Total: -19.54 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -4.36 Total: -70.56 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: -17.34 SS G_CDS: -1.37 Total: -18.71 kcal Total: -51.63 0.36 -51.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131857.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.806 kcal (2) G-P(sol) polarization free energy of solvation -51.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds