Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47411 * 2 1 4 4 C 1.53000 * 109.47251 * 120.00072 * 2 1 3 5 5 C 1.53002 * 109.46790 * 65.00138 * 4 2 1 6 6 H 1.08995 * 110.46694 * 305.70123 * 5 4 2 7 7 C 1.54093 * 110.51971 * 183.06929 * 5 4 2 8 8 N 1.47412 * 103.62813 * 241.40533 * 7 5 4 9 9 C 1.37200 * 125.52561 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99963 * 174.12432 * 9 8 7 11 11 C 1.38887 * 120.00160 * 354.12733 * 9 8 7 12 12 N 1.31466 * 119.99819 * 6.91644 * 11 9 8 13 13 Si 1.86799 * 120.00073 * 186.91503 * 11 9 8 14 14 H 1.48505 * 109.47161 * 89.99784 * 13 11 9 15 15 H 1.48496 * 109.47114 * 209.99748 * 13 11 9 16 16 H 1.48502 * 109.46995 * 330.00076 * 13 11 9 17 17 C 1.34001 * 108.91497 * 359.88750 * 8 7 5 18 18 O 1.21506 * 123.07131 * 180.09532 * 17 8 7 19 19 O 1.33797 * 113.85312 * 0.07758 * 17 8 7 20 20 H 1.08999 * 109.46896 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47099 * 299.99450 * 1 2 3 22 22 H 1.08999 * 109.46782 * 59.99956 * 1 2 3 23 23 H 1.09002 * 109.47126 * 239.99994 * 2 1 3 24 24 H 1.09000 * 109.47361 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47221 * 300.00580 * 3 2 1 26 26 H 1.09002 * 109.46980 * 59.99904 * 3 2 1 27 27 H 1.09005 * 109.47269 * 184.99814 * 4 2 1 28 28 H 1.08996 * 109.47617 * 304.99948 * 4 2 1 29 29 H 1.09004 * 110.56442 * 359.94435 * 7 5 4 30 30 H 1.09000 * 110.56236 * 122.79163 * 7 5 4 31 31 H 0.97001 * 119.99749 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1878 6 1 0.5595 -2.2895 1.0402 7 6 2.0706 -2.9290 2.4711 8 7 3.0060 -3.9583 1.9825 9 6 3.6650 -4.8726 2.7649 10 1 4.2579 -5.6493 2.3048 11 6 3.5698 -4.7993 4.1486 12 7 2.7432 -3.9425 4.7061 13 14 4.6162 -5.9182 5.2174 14 1 5.9072 -5.2491 5.5192 15 1 3.8986 -6.2043 6.4856 16 1 4.8749 -7.1908 4.4970 17 6 3.1062 -3.8569 0.6501 18 8 3.8113 -4.5857 -0.0192 19 8 2.3585 -2.8799 0.1241 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1264 -0.6444 1.2951 28 1 1.6055 -0.2618 2.1370 29 1 2.5759 -2.2434 3.1514 30 1 1.2117 -3.3900 2.9587 31 1 2.6764 -3.8915 5.6724 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142256.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = -105.713172 kcal Electronic energy + Delta-G solvation = -14720.693634 eV Core-core repulsion = 12194.244885 eV Total energy + Delta-G solvation = -2526.448749 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.27194 -38.33886 -36.82612 -36.70641 -33.63354 -31.52965 -28.07965 -27.92045 -26.30739 -23.40455 -22.47770 -20.89229 -19.61598 -17.98498 -17.43202 -17.28679 -16.28583 -15.92936 -15.43511 -15.21442 -14.85554 -14.30990 -14.24884 -13.71063 -13.32129 -12.98261 -12.96600 -12.76302 -12.66877 -12.42502 -12.12875 -12.02435 -11.58534 -11.48314 -11.38019 -11.20690 -10.97768 -10.04952 -8.46161 -6.04566 1.38651 1.42008 1.54468 1.96969 2.04768 2.40801 3.04105 3.15561 3.49828 3.80151 3.93628 4.12169 4.20367 4.45363 4.54414 4.77599 4.81310 4.90965 4.95528 5.06186 5.09600 5.15588 5.24184 5.33335 5.35599 5.51107 5.55519 6.08717 6.41852 6.92574 7.23078 7.79136 8.62677 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043845 B = 0.008574 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.462211 B = 3265.029563 C = 3625.533282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.111 4.111 5 C 0.056 3.944 6 H 0.129 0.871 7 C 0.114 3.886 8 N -0.469 5.469 9 C -0.336 4.336 10 H 0.084 0.916 11 C 0.001 3.999 12 N -0.898 5.898 13 Si 1.004 2.996 14 H -0.270 1.270 15 H -0.266 1.266 16 H -0.272 1.272 17 C 0.566 3.434 18 O -0.623 6.623 19 O -0.346 6.346 20 H 0.050 0.950 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 10.115 -0.283 11.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.199 4.199 4 C -0.148 4.148 5 C 0.000 4.000 6 H 0.146 0.854 7 C -0.009 4.009 8 N -0.201 5.201 9 C -0.461 4.461 10 H 0.102 0.898 11 C -0.200 4.200 12 N -0.537 5.537 13 Si 0.826 3.174 14 H -0.195 1.195 15 H -0.190 1.190 16 H -0.197 1.197 17 C 0.321 3.679 18 O -0.518 6.518 19 O -0.257 6.257 20 H 0.069 0.931 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.631 9.905 -0.603 11.409 hybrid contribution 0.550 -0.752 0.507 1.061 sum -5.080 9.153 -0.096 10.469 Atomic orbital electron populations 1.21886 0.93723 1.01875 1.02856 1.21076 0.97125 0.96603 0.96732 1.21794 1.00585 0.94751 1.02746 1.21973 1.01240 0.90902 1.00712 1.24481 0.97777 0.93959 0.83749 0.85402 1.22711 0.93821 0.90042 0.94329 1.43920 1.40907 1.31297 1.04000 1.19539 1.28642 1.09405 0.88533 0.89779 1.26084 0.97709 0.99196 0.97057 1.69931 1.34815 1.36472 1.12488 0.84782 0.77825 0.77711 0.77103 1.19498 1.19031 1.19663 1.18522 0.83447 0.82883 0.83067 1.90757 1.46864 1.48577 1.65619 1.87100 1.57830 1.45381 1.35412 0.93109 0.91132 0.91677 0.92784 0.93529 0.91564 0.91397 0.92897 0.87451 0.89528 0.90209 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.96 71.98 0.65 -2.27 16 2 C -0.10 -2.37 2.89 -10.79 -0.03 -2.40 16 3 C -0.14 -2.83 9.19 71.98 0.66 -2.17 16 4 C -0.11 -3.20 4.25 30.60 0.13 -3.07 16 5 C 0.06 2.02 3.67 30.96 0.11 2.13 16 6 H 0.13 3.85 6.39 -2.39 -0.02 3.84 16 7 C 0.11 5.05 5.32 86.57 0.46 5.51 16 8 N -0.47 -25.64 3.09 -763.31 -2.36 -27.99 16 9 C -0.34 -19.24 9.93 84.01 0.83 -18.41 16 10 H 0.08 5.07 7.69 -2.91 -0.02 5.05 16 11 C 0.00 0.06 5.48 84.90 0.47 0.52 16 12 N -0.90 -45.23 10.42 21.66 0.23 -45.00 16 13 Si 1.00 41.16 29.56 68.60 2.03 43.19 16 14 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 17 C 0.57 31.78 8.80 129.91 1.14 32.92 16 18 O -0.62 -39.53 17.54 19.66 0.34 -39.18 16 19 O -0.35 -16.17 10.46 -47.55 -0.50 -16.67 16 20 H 0.05 1.08 6.47 -2.39 -0.02 1.06 16 21 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.05 1.58 7.86 -2.39 -0.02 1.56 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.09 3.89 6.98 -2.38 -0.02 3.87 16 30 H 0.08 3.58 7.66 -2.39 -0.02 3.56 16 31 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 Total: -1.00 -67.28 259.23 5.27 -62.01 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.11 Total: 10.89 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 4.42 Total: 12.76 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -2.13 Total: -73.00 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -0.15 Total: -55.85 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -67.28 5.27 -62.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142256.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.707 kcal (2) G-P(sol) polarization free energy of solvation -67.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds