Wall clock time and date at job start Mon Mar 30 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99681 * 2 1 4 4 H 1.48504 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46804 * 299.99229 * 3 2 1 6 6 H 1.48501 * 109.47461 * 59.99855 * 3 2 1 7 7 C 1.37878 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99779 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.57055 * 54.74608 * 9 7 2 11 11 C 1.54508 * 109.57686 * 294.49610 * 9 7 2 12 12 C 1.45863 * 111.59465 * 162.87022 * 11 9 7 13 13 N 1.47797 * 112.91593 * 61.32293 * 12 11 9 14 14 C 1.44271 * 109.46943 * 276.74339 * 13 12 11 15 15 C 1.54069 * 111.98370 * 96.43424 * 14 13 12 16 16 C 1.50459 * 109.67724 * 175.06230 * 9 7 2 17 17 H 1.08992 * 108.77249 * 91.22904 * 16 9 7 18 18 C 1.50696 * 108.76952 * 332.94304 * 16 9 7 19 19 O 1.20825 * 120.00368 * 292.88006 * 18 16 9 20 20 O 1.34237 * 119.99944 * 112.88343 * 18 16 9 21 21 H 0.96994 * 120.00242 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.05456 * 42.32044 * 11 9 7 23 23 H 1.09002 * 108.99757 * 283.37596 * 11 9 7 24 24 H 1.09000 * 108.79188 * 300.43709 * 12 11 9 25 25 H 1.08999 * 108.79515 * 182.20971 * 12 11 9 26 26 H 1.00899 * 111.00038 * 39.62022 * 13 12 11 27 27 H 1.09000 * 108.97951 * 217.08567 * 14 13 12 28 28 H 1.09005 * 108.97522 * 335.79346 * 14 13 12 29 29 H 1.08999 * 108.91418 * 198.19448 * 15 14 13 30 30 H 1.08995 * 108.84076 * 79.59387 * 15 14 13 31 31 H 0.96699 * 116.99952 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5555 -2.5191 -0.8384 11 6 0.4690 -2.6454 1.3250 12 6 -0.5720 -3.6622 1.2243 13 7 -0.0356 -5.0078 0.9309 14 6 0.1764 -5.1417 -0.4899 15 6 1.6368 -4.8504 -0.8850 16 6 2.2202 -3.6437 -0.1208 17 1 2.5058 -3.9690 0.8795 18 6 3.4518 -3.1617 -0.8432 19 8 3.3843 -2.8447 -2.0071 20 8 4.6239 -3.0846 -0.1935 21 1 -0.4850 0.8400 -0.0004 22 1 0.0094 -1.6890 1.5744 23 1 1.1630 -2.9240 2.1180 24 1 -1.2637 -3.3791 0.4308 25 1 -1.1185 -3.6998 2.1666 26 1 0.8183 -5.1759 1.4413 27 1 -0.0767 -6.1580 -0.7919 28 1 -0.4782 -4.4446 -1.0132 29 1 1.6792 -4.6453 -1.9547 30 1 2.2419 -5.7310 -0.6701 31 1 5.3861 -2.7701 -0.6988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261219708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:02 Heat of formation + Delta-G solvation = -102.943643 kcal Electronic energy + Delta-G solvation = -15253.587570 eV Core-core repulsion = 12727.258917 eV Total energy + Delta-G solvation = -2526.328654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91937 -37.96185 -35.28533 -33.65598 -32.11681 -30.99531 -26.30536 -25.63812 -22.94935 -21.80420 -20.47937 -18.52176 -17.35340 -16.79155 -15.84172 -15.07843 -14.71792 -14.31394 -14.18994 -13.87055 -13.01283 -12.48282 -12.41687 -12.08907 -11.78744 -11.29546 -11.01529 -10.83140 -10.75765 -10.44046 -10.36420 -10.15505 -9.76620 -9.51537 -9.43063 -9.02172 -8.47806 -7.84334 -6.11859 -4.17690 3.17741 3.25582 3.32831 3.36437 3.83813 4.36185 4.97048 5.17278 5.31728 5.43169 5.64620 5.90271 5.99831 6.08417 6.15894 6.33000 6.39148 6.46184 6.63320 6.79031 6.96419 7.12095 7.25096 7.35178 7.67654 7.77859 7.84695 7.97326 8.20990 8.76286 8.82085 9.47645 10.95373 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.014519 C = 0.010536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.709672 B = 1927.984987 C = 2656.852588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.062 3.938 10 H 0.044 0.956 11 C -0.142 4.142 12 C 0.055 3.945 13 N -0.679 5.679 14 C 0.062 3.938 15 C -0.142 4.142 16 C -0.066 4.066 17 H 0.076 0.924 18 C 0.507 3.493 19 O -0.523 6.523 20 O -0.528 6.528 21 H 0.262 0.738 22 H 0.094 0.906 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.335 0.665 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 -7.271 1.428 7.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.074 0.926 9 C 0.044 3.956 10 H 0.062 0.938 11 C -0.181 4.181 12 C -0.073 4.073 13 N -0.308 5.308 14 C -0.069 4.069 15 C -0.181 4.181 16 C -0.086 4.086 17 H 0.095 0.905 18 C 0.351 3.649 19 O -0.411 6.411 20 O -0.339 6.339 21 H 0.072 0.928 22 H 0.112 0.888 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.152 0.848 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.589 -7.526 1.330 7.806 hybrid contribution 1.884 1.907 -0.492 2.726 sum 3.473 -5.619 0.838 6.659 Atomic orbital electron populations 1.69910 1.05789 1.26667 1.49714 1.24880 0.94860 0.99078 0.94604 0.86548 0.80178 0.83764 0.77647 1.19886 1.20884 1.20857 1.21190 0.92370 0.90594 1.51605 0.92612 1.18470 0.92396 0.90032 0.94750 0.93789 1.21216 0.97560 1.00609 0.98711 1.21038 0.98073 0.87176 1.01018 1.61172 1.34047 1.29080 1.06494 1.21773 0.94275 1.00900 0.89935 1.22629 0.97987 0.95974 1.01540 1.21184 0.91312 0.97919 0.98181 0.90543 1.23334 0.83478 0.72793 0.85297 1.90608 1.85220 1.46427 1.18817 1.84617 1.20120 1.80403 1.48758 0.92842 0.88792 0.94712 0.91635 0.92677 0.84830 0.91727 0.91281 0.90808 0.92503 0.74903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.59 11.82 55.43 0.66 -23.93 16 2 C 0.07 1.87 5.20 -17.82 -0.09 1.78 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.01 7.55 -34.44 -0.26 -14.27 16 8 H 0.06 1.53 5.83 -52.49 -0.31 1.22 16 9 C 0.06 1.47 1.51 -92.25 -0.14 1.33 16 10 H 0.04 1.17 7.15 -51.93 -0.37 0.80 16 11 C -0.14 -3.07 4.61 -29.32 -0.14 -3.20 16 12 C 0.06 1.03 5.87 -6.71 -0.04 0.99 16 13 N -0.68 -11.22 6.91 -118.15 -0.82 -12.04 16 14 C 0.06 1.01 6.01 -4.67 -0.03 0.98 16 15 C -0.14 -2.43 5.27 -25.50 -0.13 -2.56 16 16 C -0.07 -1.34 1.95 -92.37 -0.18 -1.52 16 17 H 0.08 1.44 6.76 -51.93 -0.35 1.09 16 18 C 0.51 10.82 4.56 36.00 0.16 10.98 16 19 O -0.52 -12.60 16.99 -18.75 -0.32 -12.91 16 20 O -0.53 -9.59 13.15 -39.28 -0.52 -10.10 16 21 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 22 H 0.09 2.32 6.34 -51.93 -0.33 1.99 16 23 H 0.03 0.71 7.58 -51.93 -0.39 0.32 16 24 H 0.07 1.30 7.24 -51.93 -0.38 0.93 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.33 5.25 7.35 -39.29 -0.29 4.96 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.23 6.51 -51.93 -0.34 0.89 16 29 H 0.07 1.35 7.52 -51.93 -0.39 0.96 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.39 5.36 9.10 45.56 0.41 5.78 16 LS Contribution 246.37 15.07 3.71 3.71 Total: -1.00 -29.93 246.37 -6.28 -36.21 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.13 Total: 8.12 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.84 Total: -5.49 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.16 Total: -35.97 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.83 Total: -23.02 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.93 -6.28 -36.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.732 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds