Wall clock time and date at job start Mon Mar 30 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99681 * 2 1 4 4 H 1.48504 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46804 * 299.99229 * 3 2 1 6 6 H 1.48501 * 109.47461 * 59.99855 * 3 2 1 7 7 C 1.37878 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99779 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.57055 * 54.74608 * 9 7 2 11 11 C 1.54508 * 109.57686 * 294.49610 * 9 7 2 12 12 C 1.45863 * 111.59465 * 162.87022 * 11 9 7 13 13 N 1.47797 * 112.91593 * 61.32293 * 12 11 9 14 14 C 1.44271 * 109.46943 * 276.74339 * 13 12 11 15 15 C 1.54069 * 111.98370 * 96.43424 * 14 13 12 16 16 C 1.50459 * 109.67724 * 175.06230 * 9 7 2 17 17 H 1.08992 * 108.77249 * 91.22904 * 16 9 7 18 18 C 1.50696 * 108.76952 * 332.94304 * 16 9 7 19 19 O 1.20825 * 120.00368 * 292.88006 * 18 16 9 20 20 O 1.34237 * 119.99944 * 112.88343 * 18 16 9 21 21 H 0.96994 * 120.00242 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.05456 * 42.32044 * 11 9 7 23 23 H 1.09002 * 108.99757 * 283.37596 * 11 9 7 24 24 H 1.09000 * 108.79188 * 300.43709 * 12 11 9 25 25 H 1.08999 * 108.79515 * 182.20971 * 12 11 9 26 26 H 1.00899 * 111.00038 * 39.62022 * 13 12 11 27 27 H 1.09000 * 108.97951 * 217.08567 * 14 13 12 28 28 H 1.09005 * 108.97522 * 335.79346 * 14 13 12 29 29 H 1.08999 * 108.91418 * 198.19448 * 15 14 13 30 30 H 1.08995 * 108.84076 * 79.59387 * 15 14 13 31 31 H 0.96699 * 116.99952 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5555 -2.5191 -0.8384 11 6 0.4690 -2.6454 1.3250 12 6 -0.5720 -3.6622 1.2243 13 7 -0.0356 -5.0078 0.9309 14 6 0.1764 -5.1417 -0.4899 15 6 1.6368 -4.8504 -0.8850 16 6 2.2202 -3.6437 -0.1208 17 1 2.5058 -3.9690 0.8795 18 6 3.4518 -3.1617 -0.8432 19 8 3.3843 -2.8447 -2.0071 20 8 4.6239 -3.0846 -0.1935 21 1 -0.4850 0.8400 -0.0004 22 1 0.0094 -1.6890 1.5744 23 1 1.1630 -2.9240 2.1180 24 1 -1.2637 -3.3791 0.4308 25 1 -1.1185 -3.6998 2.1666 26 1 0.8183 -5.1759 1.4413 27 1 -0.0767 -6.1580 -0.7919 28 1 -0.4782 -4.4446 -1.0132 29 1 1.6792 -4.6453 -1.9547 30 1 2.2419 -5.7310 -0.6701 31 1 5.3861 -2.7701 -0.6988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261219708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:02 Heat of formation + Delta-G solvation = -125.231424 kcal Electronic energy + Delta-G solvation = -15254.554041 eV Core-core repulsion = 12727.258917 eV Total energy + Delta-G solvation = -2527.295124 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.56378 -39.52027 -36.89816 -35.49710 -33.71065 -32.77504 -28.12672 -27.19852 -24.75113 -23.30033 -22.08848 -20.17463 -18.99642 -18.71771 -17.53575 -16.76163 -16.39969 -15.89624 -15.82234 -15.45405 -14.58151 -14.21991 -14.00010 -13.74130 -13.48258 -12.97616 -12.88711 -12.60399 -12.42296 -12.19829 -11.99943 -11.81618 -11.44791 -11.32808 -11.14936 -10.84518 -10.50127 -9.28108 -8.18857 -6.30170 1.32007 1.35316 1.44223 1.51358 2.31976 2.38581 3.11115 3.57768 3.82162 4.01438 4.20367 4.36135 4.51799 4.52371 4.68019 4.78023 4.95874 5.06216 5.14165 5.18008 5.28083 5.39310 5.51452 5.71696 5.83111 5.90736 6.18660 6.25980 6.63045 6.77817 7.20897 7.37244 8.87194 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.014519 C = 0.010536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.709672 B = 1927.984987 C = 2656.852588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.064 3.936 10 H 0.006 0.994 11 C -0.129 4.129 12 C 0.064 3.936 13 N -0.665 5.665 14 C 0.065 3.935 15 C -0.134 4.134 16 C -0.069 4.069 17 H 0.095 0.905 18 C 0.506 3.494 19 O -0.558 6.558 20 O -0.519 6.519 21 H 0.262 0.738 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.344 0.656 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -8.466 2.255 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.066 0.934 9 C 0.046 3.954 10 H 0.024 0.976 11 C -0.169 4.169 12 C -0.065 4.065 13 N -0.295 5.295 14 C -0.066 4.066 15 C -0.174 4.174 16 C -0.088 4.088 17 H 0.113 0.887 18 C 0.352 3.648 19 O -0.449 6.449 20 O -0.332 6.332 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.163 0.837 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 2.441 -8.731 2.174 9.323 hybrid contribution 1.692 2.278 -0.760 2.937 sum 4.133 -6.453 1.415 7.792 Atomic orbital electron populations 1.70014 1.06762 1.27223 1.50478 1.25570 0.95658 1.01957 0.94727 0.85725 0.79038 0.80535 0.77729 1.19739 1.21099 1.19836 1.21533 0.92307 0.92285 1.51176 0.93356 1.18326 0.92387 0.90408 0.94320 0.97593 1.21047 0.98136 0.99943 0.97729 1.20858 0.96896 0.87522 1.01207 1.61214 1.34588 1.26939 1.06710 1.21810 0.93266 1.02001 0.89513 1.22604 0.98912 0.95753 1.00096 1.21157 0.90340 0.97694 0.99652 0.88703 1.23554 0.84440 0.72006 0.84821 1.90594 1.85931 1.48051 1.20339 1.84553 1.20167 1.79927 1.48574 0.92861 0.92224 0.93477 0.93521 0.90980 0.83722 0.88610 0.93568 0.92383 0.89112 0.72512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.49 11.82 21.45 0.25 -51.24 16 2 C 0.02 1.15 5.20 84.65 0.44 1.59 16 3 Si 0.94 44.19 29.54 68.60 2.03 46.21 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -29.03 7.55 25.60 0.19 -28.84 16 8 H 0.05 2.64 5.83 -2.91 -0.02 2.62 16 9 C 0.06 3.06 1.51 -11.85 -0.02 3.04 16 10 H 0.01 0.33 7.15 -2.39 -0.02 0.31 16 11 C -0.13 -5.54 4.61 28.92 0.13 -5.41 16 12 C 0.06 2.33 5.87 83.94 0.49 2.82 16 13 N -0.67 -20.26 6.91 -527.70 -3.65 -23.91 16 14 C 0.06 1.97 6.01 87.16 0.52 2.49 16 15 C -0.13 -4.31 5.27 31.39 0.17 -4.15 16 16 C -0.07 -2.68 1.95 -11.92 -0.02 -2.70 16 17 H 0.09 3.32 6.76 -2.39 -0.02 3.30 16 18 C 0.51 21.03 4.56 71.23 0.32 21.36 16 19 O -0.56 -26.82 16.99 21.97 0.37 -26.45 16 20 O -0.52 -17.76 13.15 -51.49 -0.68 -18.44 16 21 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 22 H 0.06 2.99 6.34 -2.39 -0.02 2.97 16 23 H 0.05 1.87 7.58 -2.39 -0.02 1.85 16 24 H 0.05 1.87 7.24 -2.39 -0.02 1.85 16 25 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.34 9.57 7.35 -89.69 -0.66 8.91 16 27 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 28 H 0.05 1.63 6.51 -2.38 -0.02 1.61 16 29 H 0.06 2.06 7.52 -2.39 -0.02 2.05 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.42 10.39 9.10 -74.06 -0.67 9.71 16 Total: -1.00 -64.42 246.37 0.39 -64.03 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.18 Total: 19.60 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 2.23 Total: -9.80 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -3.39 Total: -75.15 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.30 Total: -44.89 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.42 0.39 -64.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.202 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds