Wall clock time and date at job start Mon Mar 30 2020 02:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47041 * 2 1 4 4 C 1.52999 * 109.46873 * 240.00318 * 2 1 3 5 5 C 1.53001 * 110.70448 * 59.29844 * 4 2 1 6 6 C 1.54604 * 110.79224 * 182.62879 * 4 2 1 7 7 C 1.52238 * 102.62364 * 93.17095 * 6 4 2 8 8 O 1.21296 * 126.20136 * 195.20221 * 7 6 4 9 9 N 1.34768 * 107.55697 * 15.22985 * 7 6 4 10 10 C 1.37105 * 124.16390 * 181.15731 * 9 7 6 11 11 H 1.08004 * 119.99924 * 354.01684 * 10 9 7 12 12 C 1.38950 * 120.00246 * 174.01397 * 10 9 7 13 13 N 1.31413 * 119.99935 * 6.07805 * 12 10 9 14 14 Si 1.86799 * 119.99947 * 186.07436 * 12 10 9 15 15 H 1.48508 * 109.46858 * 90.00273 * 14 12 10 16 16 H 1.48503 * 109.47127 * 210.00174 * 14 12 10 17 17 H 1.48497 * 109.47094 * 330.00428 * 14 12 10 18 18 O 1.41455 * 111.67692 * 1.14907 * 9 7 6 19 19 H 1.09003 * 109.47231 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.47076 * 299.99781 * 1 2 3 21 21 H 1.08996 * 109.47119 * 59.99472 * 1 2 3 22 22 H 1.08996 * 109.47119 * 120.00528 * 2 1 3 23 23 H 1.08996 * 109.47596 * 300.00236 * 3 2 1 24 24 H 1.09007 * 109.47007 * 60.00177 * 3 2 1 25 25 H 1.08997 * 109.47271 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47036 * 59.99987 * 5 4 2 27 27 H 1.09003 * 109.47217 * 179.97438 * 5 4 2 28 28 H 1.09004 * 109.47114 * 299.99821 * 5 4 2 29 29 H 1.08998 * 110.73400 * 211.45470 * 6 4 2 30 30 H 1.09001 * 110.73519 * 334.76513 * 6 4 2 31 31 H 0.96992 * 120.00037 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5313 -0.0322 -2.5171 6 6 3.5842 -0.7967 -1.2475 7 6 3.8505 -2.1475 -0.5978 8 8 4.9108 -2.5306 -0.1503 9 7 2.6943 -2.8399 -0.6108 10 6 2.5443 -4.0978 -0.0866 11 1 3.4048 -4.6337 0.2860 12 6 1.2852 -4.6833 -0.0346 13 7 0.2584 -4.0841 -0.5945 14 14 1.0522 -6.3221 0.8310 15 1 0.7278 -6.0850 2.2607 16 1 -0.0595 -7.0678 0.1882 17 1 2.3032 -7.1162 0.7324 18 8 1.6545 -2.1089 -1.2317 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 1.8934 -0.5139 0.8899 23 1 1.6767 1.9564 -0.8899 24 1 1.6767 1.9563 0.8901 25 1 3.1300 1.4425 0.0005 26 1 1.8844 0.9988 -2.5369 27 1 1.9062 -0.5610 -3.3935 28 1 0.4414 -0.0432 -2.5243 29 1 3.9728 -0.7736 -2.2656 30 1 4.0094 0.0116 -0.6526 31 1 -0.6204 -4.4929 -0.5586 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261268156.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:31 Heat of formation + Delta-G solvation = -49.686018 kcal Electronic energy + Delta-G solvation = -15287.563274 eV Core-core repulsion = 12763.544044 eV Total energy + Delta-G solvation = -2524.019230 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44974 -38.43010 -36.71726 -34.85547 -32.41280 -31.71036 -29.34722 -27.87113 -26.41136 -23.98049 -21.72026 -20.49323 -19.60270 -17.53571 -16.91176 -16.60298 -16.45339 -15.66662 -15.62660 -14.98841 -14.38373 -14.01279 -13.78661 -13.54670 -13.26589 -13.10315 -12.90680 -12.81319 -12.69733 -12.61684 -12.28401 -12.14406 -11.77394 -11.55914 -11.45906 -10.85255 -10.44485 -9.67438 -8.41428 -6.04865 1.32730 1.36765 1.50804 1.76616 1.84433 2.33683 3.09532 3.33520 3.66957 3.73321 3.88635 4.03050 4.38902 4.49745 4.53067 4.64953 4.73745 4.85945 4.95323 5.00030 5.07548 5.11223 5.23794 5.26727 5.29305 5.54550 5.57990 5.86833 6.37689 6.90851 7.29891 7.82964 8.65250 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033823 B = 0.012254 C = 0.010318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.631671 B = 2284.493026 C = 2713.012478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 C -0.139 4.139 4 C 0.062 3.938 5 C -0.129 4.129 6 C -0.153 4.153 7 C 0.401 3.599 8 O -0.625 6.625 9 N -0.310 5.310 10 C -0.363 4.363 11 H 0.106 0.894 12 C 0.004 3.996 13 N -0.859 5.859 14 Si 0.997 3.003 15 H -0.267 1.267 16 H -0.267 1.267 17 H -0.265 1.265 18 O -0.118 6.118 19 H 0.028 0.972 20 H 0.063 0.937 21 H 0.076 0.924 22 H 0.031 0.969 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 10.082 -1.935 10.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 C -0.196 4.196 4 C 0.022 3.978 5 C -0.187 4.187 6 C -0.194 4.194 7 C 0.191 3.809 8 O -0.515 6.515 9 N -0.070 5.070 10 C -0.488 4.488 11 H 0.124 0.876 12 C -0.202 4.202 13 N -0.494 5.494 14 Si 0.819 3.181 15 H -0.193 1.193 16 H -0.191 1.191 17 H -0.189 1.189 18 O -0.121 6.121 19 H 0.048 0.952 20 H 0.082 0.918 21 H 0.095 0.905 22 H 0.049 0.951 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.822 9.711 -1.846 10.279 hybrid contribution -0.098 -1.010 0.465 1.116 sum -2.919 8.701 -1.381 9.281 Atomic orbital electron populations 1.21702 0.94016 1.00990 1.02463 1.21351 0.97338 0.97655 0.95498 1.21897 1.01247 0.92812 1.03652 1.23168 0.92635 0.83499 0.98514 1.21879 1.02416 1.01276 0.93099 1.23093 0.96728 0.95792 1.03756 1.21370 0.83179 0.89722 0.86651 1.90502 1.27367 1.76969 1.56639 1.45997 1.02163 1.12158 1.46725 1.19951 0.96321 0.91159 1.41331 0.87609 1.26259 0.94001 1.03266 0.96663 1.70107 1.00448 1.39664 1.39131 0.84899 0.78635 0.76337 0.78278 1.19263 1.19131 1.18896 1.91420 1.28301 1.16315 1.76099 0.95227 0.91841 0.90498 0.95081 0.89699 0.91383 0.92113 0.87010 0.92155 0.91132 0.86756 0.86095 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.74 71.98 0.63 -3.70 16 2 C -0.10 -3.36 2.52 -10.79 -0.03 -3.39 16 3 C -0.14 -3.23 8.67 71.98 0.62 -2.60 16 4 C 0.06 2.31 0.64 -10.25 -0.01 2.31 16 5 C -0.13 -3.55 8.22 71.98 0.59 -2.96 16 6 C -0.15 -5.87 6.01 30.89 0.19 -5.69 16 7 C 0.40 21.44 8.17 88.15 0.72 22.16 16 8 O -0.62 -37.49 17.69 -3.08 -0.05 -37.54 16 9 N -0.31 -17.66 3.76 -305.39 -1.15 -18.81 16 10 C -0.36 -21.69 9.98 84.04 0.84 -20.86 16 11 H 0.11 6.45 7.72 -2.91 -0.02 6.43 16 12 C 0.00 0.23 5.50 84.93 0.47 0.70 16 13 N -0.86 -48.29 11.79 21.66 0.26 -48.03 16 14 Si 1.00 42.84 29.56 68.60 2.03 44.86 16 15 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 18 O -0.12 -6.05 9.15 -38.46 -0.35 -6.40 16 19 H 0.03 1.20 7.86 -2.39 -0.02 1.18 16 20 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 21 H 0.08 2.04 6.52 -2.39 -0.02 2.03 16 22 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.08 1.52 6.55 -2.39 -0.02 1.51 16 24 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.06 1.37 6.28 -2.39 -0.01 1.35 16 26 H 0.11 2.15 6.57 -2.39 -0.02 2.13 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.92 6.54 -2.38 -0.02 1.90 16 29 H 0.11 3.83 7.91 -2.39 -0.02 3.81 16 30 H 0.12 3.96 6.02 -2.39 -0.01 3.94 16 31 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -72.95 254.56 5.87 -67.08 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.12 Total: 12.88 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 4.02 Total: -14.04 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -0.89 Total: -66.84 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.41 Total: -43.94 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -72.95 5.87 -67.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268156.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.397 kcal (2) G-P(sol) polarization free energy of solvation -72.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds