Wall clock time and date at job start Mon Mar 30 2020 02:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47293 * 2 1 4 4 C 1.52993 * 110.70427 * 303.12479 * 3 2 1 5 5 C 1.54772 * 111.02591 * 179.61398 * 3 2 1 6 6 C 1.51723 * 102.78715 * 267.18252 * 5 3 2 7 7 O 1.21283 * 126.24623 * 164.68452 * 6 5 3 8 8 N 1.34780 * 107.51509 * 344.42112 * 6 5 3 9 9 C 1.46498 * 124.16443 * 179.08674 * 8 6 5 10 10 C 1.50694 * 109.47442 * 74.99763 * 9 8 6 11 11 H 1.08000 * 119.99864 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00463 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99636 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00301 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47124 * 59.99807 * 14 12 10 16 16 H 1.48507 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47155 * 299.99118 * 14 12 10 18 18 O 1.41464 * 111.67393 * 359.08073 * 8 6 5 19 19 H 1.08994 * 109.47265 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46576 * 299.99869 * 1 2 3 21 21 H 1.09000 * 109.47036 * 59.99447 * 1 2 3 22 22 H 1.09004 * 109.46576 * 240.00131 * 2 1 3 23 23 H 1.09000 * 109.47036 * 120.00553 * 2 1 3 24 24 H 1.09001 * 109.46870 * 181.87470 * 4 3 2 25 25 H 1.08994 * 109.47727 * 301.87749 * 4 3 2 26 26 H 1.09005 * 109.47383 * 61.87962 * 4 3 2 27 27 H 1.09003 * 110.87097 * 148.82481 * 5 3 2 28 28 H 1.08997 * 110.67765 * 25.45275 * 5 3 2 29 29 H 1.08998 * 109.47166 * 195.00131 * 9 8 6 30 30 H 1.09010 * 109.46908 * 314.99684 * 9 8 6 31 31 H 0.97003 * 119.99912 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4831 2.2131 -1.1985 5 6 3.5872 1.4844 0.0097 6 6 3.9115 1.5696 1.4894 7 8 4.9930 1.3661 1.9994 8 7 2.7800 1.9183 2.1333 9 6 2.6775 2.0848 3.5852 10 6 3.3333 3.3798 3.9898 11 1 3.7819 4.0151 3.2405 12 6 3.3615 3.7532 5.3168 13 7 2.8156 2.9793 6.2293 14 14 4.1737 5.3589 5.8182 15 1 3.4918 6.4911 5.1414 16 1 4.0699 5.5276 7.2900 17 1 5.6047 5.3346 5.4221 18 8 1.7034 2.1038 1.2345 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.8847 3.2265 -1.1974 25 1 1.7717 1.7090 -2.1208 26 1 0.3958 2.2533 -1.1313 27 1 3.9551 2.3649 -0.5172 28 1 3.9997 0.5734 -0.4239 29 1 1.6271 2.1032 3.8756 30 1 3.1774 1.2535 4.0824 31 1 2.8357 3.2418 7.1630 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261268860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:18 Heat of formation + Delta-G solvation = -58.418781 kcal Electronic energy + Delta-G solvation = -14730.569813 eV Core-core repulsion = 12206.171902 eV Total energy + Delta-G solvation = -2524.397911 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64178 -38.73368 -36.27117 -34.99808 -32.89949 -31.80886 -29.92992 -27.91474 -25.26496 -24.44499 -22.14764 -20.60271 -18.84502 -18.01635 -17.38409 -16.76581 -16.52265 -15.97333 -15.66606 -15.05287 -14.61365 -14.21741 -14.09588 -13.80282 -13.58831 -13.20869 -12.97033 -12.80230 -12.75673 -12.69716 -12.37163 -12.13764 -11.90355 -11.72309 -11.33436 -10.83665 -10.68068 -9.52965 -8.32096 -6.47861 1.15076 1.35472 1.39752 1.46571 1.51750 2.34940 2.94467 3.02608 3.39230 3.63283 3.71487 3.98822 4.37683 4.50871 4.60040 4.64292 4.74255 4.80927 4.90951 4.98087 5.04857 5.08748 5.14348 5.34840 5.36110 5.47250 5.64192 5.85742 6.49912 6.56586 7.04940 7.24392 8.75537 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042962 B = 0.008424 C = 0.008071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.575229 B = 3323.107057 C = 3468.445106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.072 3.928 4 C -0.133 4.133 5 C -0.160 4.160 6 C 0.486 3.514 7 O -0.568 6.568 8 N -0.473 5.473 9 C 0.285 3.715 10 C -0.554 4.554 11 H 0.051 0.949 12 C 0.013 3.987 13 N -0.924 5.924 14 Si 0.975 3.025 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.274 1.274 18 O -0.162 6.162 19 H 0.067 0.933 20 H 0.033 0.967 21 H 0.081 0.919 22 H 0.112 0.888 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.033 0.967 30 H 0.019 0.981 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 -3.384 -16.109 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.033 3.967 4 C -0.191 4.191 5 C -0.200 4.200 6 C 0.275 3.725 7 O -0.449 6.449 8 N -0.250 5.250 9 C 0.167 3.833 10 C -0.592 4.592 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.563 5.563 14 Si 0.798 3.202 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.200 1.200 18 O -0.167 6.167 19 H 0.086 0.914 20 H 0.052 0.948 21 H 0.100 0.900 22 H 0.131 0.869 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.096 0.904 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.179 -3.383 -15.511 16.416 hybrid contribution 0.367 0.550 0.867 1.091 sum -3.811 -2.833 -14.644 15.395 Atomic orbital electron populations 1.21743 0.94053 1.02443 1.02215 1.21958 0.98068 0.93630 1.03213 1.23305 0.92933 0.95120 0.85349 1.21922 1.02533 1.00146 0.94449 1.23261 0.96641 1.08181 0.91938 1.21760 0.82687 0.76526 0.91488 1.90680 1.24799 1.53953 1.75436 1.50844 1.03021 1.67059 1.04085 1.18977 0.97461 0.96229 0.70606 1.21575 1.38301 1.05814 0.93547 0.93066 1.25868 0.95606 1.01513 0.95745 1.70021 1.44920 1.39252 1.02073 0.85359 0.78712 0.78508 0.77611 1.18796 1.19468 1.19960 1.90968 1.27464 1.75580 1.22641 0.91378 0.94797 0.90045 0.86924 0.94191 0.91751 0.86712 0.90406 0.85162 0.84414 0.94936 0.96350 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.42 71.98 0.68 -2.36 16 2 C -0.13 -2.98 5.26 30.60 0.16 -2.82 16 3 C 0.07 1.92 0.94 -10.19 -0.01 1.91 16 4 C -0.13 -2.36 8.46 71.98 0.61 -1.75 16 5 C -0.16 -4.57 6.15 30.78 0.19 -4.39 16 6 C 0.49 21.93 8.08 87.98 0.71 22.64 16 7 O -0.57 -30.52 17.81 -3.04 -0.05 -30.58 16 8 N -0.47 -22.86 3.71 -465.59 -1.73 -24.59 16 9 C 0.28 16.33 5.98 85.63 0.51 16.84 16 10 C -0.55 -33.67 9.27 25.60 0.24 -33.43 16 11 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 12 C 0.01 0.74 5.46 84.65 0.46 1.20 16 13 N -0.92 -56.13 13.29 21.45 0.28 -55.85 16 14 Si 0.98 45.88 29.54 68.60 2.03 47.91 16 15 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 18 O -0.16 -6.46 11.46 -38.48 -0.44 -6.90 16 19 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 20 H 0.03 0.89 7.93 -2.38 -0.02 0.87 16 21 H 0.08 1.27 6.52 -2.39 -0.02 1.26 16 22 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 25 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.31 6.61 -2.38 -0.02 1.30 16 27 H 0.13 3.17 7.90 -2.39 -0.02 3.15 16 28 H 0.14 3.03 7.92 -2.39 -0.02 3.01 16 29 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.72 266.09 4.74 -69.98 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.10 Total: 2.19 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 3.55 Total: -2.16 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -1.44 Total: -80.44 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.49 Total: -37.47 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.72 4.74 -69.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.558 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds