Wall clock time and date at job start Mon Mar 30 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46732 * 2 1 4 4 C 1.52997 * 110.70885 * 59.29848 * 3 2 1 5 5 C 1.54608 * 110.79029 * 182.63147 * 3 2 1 6 6 C 1.51720 * 102.86690 * 143.60721 * 5 3 2 7 7 O 1.21285 * 126.24262 * 164.79490 * 6 5 3 8 8 N 1.34779 * 107.51578 * 344.79429 * 6 5 3 9 9 C 1.46501 * 124.16133 * 178.81885 * 8 6 5 10 10 C 1.50702 * 109.47267 * 74.99591 * 9 8 6 11 11 H 1.07999 * 119.99900 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99795 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99634 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00011 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47136 * 90.00221 * 14 12 10 16 16 H 1.48502 * 109.46916 * 210.00076 * 14 12 10 17 17 H 1.48497 * 109.47252 * 329.99710 * 14 12 10 18 18 O 1.41931 * 111.73176 * 358.79299 * 8 6 5 19 19 H 1.08998 * 109.47141 * 60.00135 * 1 2 3 20 20 H 1.09003 * 109.46878 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47354 * 300.00232 * 1 2 3 22 22 H 1.08995 * 109.46920 * 239.99601 * 2 1 3 23 23 H 1.08998 * 109.47141 * 119.99307 * 2 1 3 24 24 H 1.09002 * 109.47153 * 60.69837 * 4 3 2 25 25 H 1.09001 * 109.46832 * 300.70028 * 4 3 2 26 26 H 1.09004 * 109.47261 * 180.70010 * 4 3 2 27 27 H 1.09003 * 110.72934 * 261.94787 * 5 3 2 28 28 H 1.09000 * 110.73352 * 25.25752 * 5 3 2 29 29 H 1.08997 * 109.47250 * 194.99954 * 9 8 6 30 30 H 1.09008 * 109.46669 * 314.99734 * 9 8 6 31 31 H 0.97003 * 119.99940 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5313 2.1961 1.2305 5 6 3.5841 1.4787 -0.0664 6 6 3.8565 2.6902 -0.9381 7 8 4.9191 3.2623 -1.0590 8 7 2.7023 3.0148 -1.5537 9 6 2.5476 4.1507 -2.4659 10 6 3.1876 3.8222 -3.7902 11 1 3.6617 2.8631 -3.9377 12 6 3.1677 4.7462 -4.8134 13 7 3.7267 4.4597 -5.9689 14 14 2.3483 6.4053 -4.5579 15 1 3.3450 7.3744 -4.0357 16 1 1.8113 6.8966 -5.8523 17 1 1.2373 6.2637 -3.5829 18 8 1.6544 2.1211 -1.2107 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 1.8946 1.7050 2.1333 25 1 0.4413 2.1971 1.2311 26 1 1.8956 3.2232 1.2039 27 1 4.0099 1.6151 0.9278 28 1 3.9717 0.5728 -0.5325 29 1 1.4874 4.3549 -2.6154 30 1 3.0300 5.0292 -2.0372 31 1 3.7124 5.1096 -6.6889 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261268863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:20 Heat of formation + Delta-G solvation = -54.731641 kcal Electronic energy + Delta-G solvation = -14734.944295 eV Core-core repulsion = 12210.706271 eV Total energy + Delta-G solvation = -2524.238024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64838 -38.77267 -36.31225 -34.96850 -33.08310 -31.93451 -29.90956 -28.36781 -25.21459 -24.10491 -22.10116 -20.57329 -19.24809 -18.06576 -17.39201 -16.85429 -16.46383 -15.85419 -15.60158 -15.03867 -14.78017 -14.56885 -14.33300 -13.97988 -13.58666 -13.23082 -13.04502 -12.81559 -12.69394 -12.56628 -12.23342 -12.00614 -11.81865 -11.77249 -11.40252 -10.91515 -10.80312 -9.54336 -8.40006 -6.48918 1.05244 1.32767 1.36407 1.45288 1.46941 2.27028 2.88763 2.99826 3.33870 3.60280 3.79990 3.92207 4.38465 4.46395 4.57059 4.58438 4.67408 4.69047 4.74561 4.93796 5.04013 5.06908 5.15401 5.24869 5.34510 5.36552 5.50313 6.11851 6.40120 6.51416 6.99683 7.16410 8.77417 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039703 B = 0.008929 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.062585 B = 3135.071420 C = 3322.408821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C 0.073 3.927 4 C -0.158 4.158 5 C -0.162 4.162 6 C 0.490 3.510 7 O -0.564 6.564 8 N -0.473 5.473 9 C 0.249 3.751 10 C -0.551 4.551 11 H 0.023 0.977 12 C 0.013 3.987 13 N -0.941 5.941 14 Si 0.954 3.046 15 H -0.265 1.265 16 H -0.271 1.271 17 H -0.236 1.236 18 O -0.158 6.158 19 H 0.036 0.964 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.120 0.880 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.142 0.858 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 -6.907 16.541 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C 0.034 3.966 4 C -0.215 4.215 5 C -0.202 4.202 6 C 0.279 3.721 7 O -0.444 6.444 8 N -0.250 5.250 9 C 0.131 3.869 10 C -0.590 4.590 11 H 0.042 0.958 12 C -0.186 4.186 13 N -0.580 5.580 14 Si 0.775 3.225 15 H -0.190 1.190 16 H -0.196 1.196 17 H -0.159 1.159 18 O -0.162 6.162 19 H 0.055 0.945 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.138 0.862 24 H 0.126 0.874 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.160 0.840 28 H 0.142 0.858 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.897 -6.518 16.125 19.101 hybrid contribution 0.152 0.598 -0.745 0.967 sum -7.745 -5.919 15.380 18.209 Atomic orbital electron populations 1.21797 0.94400 1.02746 1.02064 1.21685 0.97571 0.90401 1.04563 1.23253 0.92404 0.95440 0.85520 1.22239 1.03135 0.99769 0.96395 1.23233 0.97110 0.96939 1.02888 1.21717 0.82265 0.86533 0.81607 1.90697 1.26406 1.59792 1.67551 1.50617 1.03762 1.25629 1.45009 1.19534 0.98677 0.82184 0.86544 1.21456 1.37781 1.02372 0.97344 0.95843 1.25915 0.95375 1.03277 0.94031 1.70044 1.45450 1.37794 1.04758 0.85635 0.79913 0.77782 0.79199 1.18963 1.19556 1.15931 1.91053 1.28294 1.52368 1.44528 0.94518 0.90759 0.90869 0.91752 0.86232 0.87443 0.90094 0.93895 0.83980 0.85812 0.92138 0.93938 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.46 71.98 0.68 -1.98 16 2 C -0.10 -1.92 5.23 30.59 0.16 -1.76 16 3 C 0.07 1.86 0.93 -10.25 -0.01 1.85 16 4 C -0.16 -3.13 8.58 71.98 0.62 -2.51 16 5 C -0.16 -4.54 6.14 30.72 0.19 -4.36 16 6 C 0.49 21.55 8.09 87.98 0.71 22.26 16 7 O -0.56 -29.85 17.81 -3.04 -0.05 -29.90 16 8 N -0.47 -21.74 3.72 -465.58 -1.73 -23.47 16 9 C 0.25 12.79 5.05 85.63 0.43 13.22 16 10 C -0.55 -34.15 9.82 25.60 0.25 -33.90 16 11 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 12 C 0.01 0.76 5.47 84.66 0.46 1.23 16 13 N -0.94 -60.67 13.96 21.45 0.30 -60.37 16 14 Si 0.95 44.06 27.47 68.60 1.88 45.95 16 15 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 18 O -0.16 -6.00 11.39 -39.53 -0.45 -6.45 16 19 H 0.04 0.83 7.86 -2.39 -0.02 0.82 16 20 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.07 1.05 6.50 -2.39 -0.02 1.03 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 24 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.45 6.50 -2.39 -0.02 1.44 16 26 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.14 2.98 7.91 -2.39 -0.02 2.96 16 28 H 0.12 3.14 7.91 -2.39 -0.02 3.12 16 29 H 0.06 2.89 7.20 -2.39 -0.02 2.88 16 30 H 0.04 2.16 7.57 -2.38 -0.02 2.14 16 31 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -78.93 262.40 4.49 -74.44 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.05 Total: 5.77 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 3.50 Total: -5.95 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -1.43 Total: -83.84 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.50 Total: -36.36 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Total: -78.93 4.49 -74.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.704 kcal (2) G-P(sol) polarization free energy of solvation -78.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds