Wall clock time and date at job start Mon Mar 30 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47239 * 2 1 4 4 C 1.53005 * 109.47042 * 239.99772 * 2 1 3 5 5 C 1.52995 * 109.46970 * 120.00152 * 2 1 3 6 6 H 1.08994 * 110.70536 * 296.66525 * 5 2 1 7 7 C 1.54601 * 110.79680 * 60.00005 * 5 2 1 8 8 C 1.51723 * 102.87092 * 143.41662 * 7 5 2 9 9 O 1.21293 * 126.24483 * 164.79517 * 8 7 5 10 10 N 1.34776 * 107.51430 * 344.79510 * 8 7 5 11 11 C 1.37096 * 124.16062 * 178.82316 * 10 8 7 12 12 H 1.07999 * 120.00436 * 6.70322 * 11 10 8 13 13 C 1.38948 * 119.99788 * 186.70997 * 11 10 8 14 14 N 1.31420 * 120.00298 * 6.69555 * 13 11 10 15 15 Si 1.86798 * 120.00022 * 186.69710 * 13 11 10 16 16 H 1.48497 * 109.47108 * 84.98938 * 15 13 11 17 17 H 1.48504 * 109.47119 * 204.99117 * 15 13 11 18 18 H 1.48497 * 109.47147 * 324.98734 * 15 13 11 19 19 O 1.41458 * 111.67444 * 359.08672 * 10 8 7 20 20 H 1.08994 * 109.46793 * 299.99997 * 1 2 3 21 21 H 1.09000 * 109.47135 * 60.00006 * 1 2 3 22 22 H 1.08996 * 109.47171 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47063 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47052 * 300.00045 * 3 2 1 25 25 H 1.08994 * 109.47226 * 60.00268 * 3 2 1 26 26 H 1.09001 * 109.47042 * 300.00499 * 4 2 1 27 27 H 1.09007 * 109.46709 * 60.00340 * 4 2 1 28 28 H 1.08992 * 109.47125 * 180.02562 * 4 2 1 29 29 H 1.09002 * 110.73538 * 25.07077 * 7 5 2 30 30 H 1.09003 * 110.88997 * 261.83428 * 7 5 2 31 31 H 0.96996 * 119.99859 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.7370 -0.1902 2.1515 7 6 1.5416 -2.1844 1.2801 8 6 2.7213 -2.9308 1.8744 9 8 2.7041 -4.0565 2.3256 10 7 3.7919 -2.1147 1.8096 11 6 5.0387 -2.4418 2.2767 12 1 5.2370 -3.4423 2.6318 13 6 6.0471 -1.4861 2.2934 14 7 5.7744 -0.2376 1.9868 15 14 7.7905 -1.9758 2.7516 16 1 8.4927 -2.4899 1.5483 17 1 8.5148 -0.7916 3.2793 18 1 7.7501 -3.0351 3.7914 19 8 3.4695 -0.8768 1.2057 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1301 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.6766 -1.7490 -1.2492 27 1 1.6767 -0.2074 -2.1393 28 1 3.1299 -0.7217 -1.2490 29 1 1.3276 -2.5406 0.2724 30 1 0.6625 -2.2822 1.9171 31 1 6.4784 0.4296 1.9988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261300093.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:27 Heat of formation + Delta-G solvation = -51.483074 kcal Electronic energy + Delta-G solvation = -15127.285915 eV Core-core repulsion = 12603.188760 eV Total energy + Delta-G solvation = -2524.097156 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.37785 -38.59043 -37.08682 -35.02308 -32.34052 -31.44974 -28.17432 -27.94601 -27.13736 -24.50302 -21.67960 -20.06456 -19.71881 -17.88695 -17.09101 -16.43463 -16.33940 -15.55358 -15.24170 -15.15002 -14.71062 -14.26453 -13.98915 -13.64606 -13.07975 -12.94448 -12.90031 -12.77765 -12.72477 -12.40645 -12.35252 -12.13054 -11.68976 -11.59846 -11.44724 -10.94804 -10.47344 -9.70842 -8.42153 -6.06794 1.32601 1.37490 1.50663 1.71969 1.84604 2.32964 3.08567 3.33110 3.56808 3.82635 3.92345 4.05795 4.22453 4.37372 4.55709 4.73105 4.81111 4.87977 4.94597 4.98344 5.09560 5.10605 5.21865 5.25503 5.33976 5.50639 5.58942 5.85064 6.35105 6.89104 7.27809 7.80604 8.64424 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036238 B = 0.011279 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.493705 B = 2481.988598 C = 3038.313826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C -0.134 4.134 4 C -0.140 4.140 5 C 0.049 3.951 6 H 0.070 0.930 7 C -0.154 4.154 8 C 0.403 3.597 9 O -0.622 6.622 10 N -0.313 5.313 11 C -0.363 4.363 12 H 0.109 0.891 13 C 0.002 3.998 14 N -0.864 5.864 15 Si 0.999 3.001 16 H -0.266 1.266 17 H -0.268 1.268 18 H -0.264 1.264 19 O -0.119 6.119 20 H 0.064 0.936 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.030 0.970 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 5.252 -5.479 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 C -0.192 4.192 4 C -0.197 4.197 5 C -0.010 4.010 6 H 0.088 0.912 7 C -0.194 4.194 8 C 0.193 3.807 9 O -0.511 6.511 10 N -0.074 5.074 11 C -0.487 4.487 12 H 0.126 0.874 13 C -0.203 4.203 14 N -0.499 5.499 15 Si 0.820 3.180 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.188 1.188 19 O -0.122 6.122 20 H 0.083 0.917 21 H 0.101 0.899 22 H 0.084 0.916 23 H 0.051 0.949 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.462 5.121 -5.365 10.520 hybrid contribution 0.899 -0.126 0.429 1.004 sum -6.563 4.994 -4.936 9.611 Atomic orbital electron populations 1.21837 0.90718 1.03099 1.03440 1.20624 0.97477 0.95378 0.91890 1.21778 1.00260 0.94569 1.02556 1.21866 1.00247 1.00311 0.97246 1.23684 0.82023 0.95212 1.00089 0.91246 1.22945 0.97654 0.94377 1.04442 1.21258 0.86140 0.86994 0.86301 1.90510 1.84904 1.20033 1.55689 1.46071 1.09006 1.04070 1.48224 1.19959 0.85489 0.98855 1.44400 0.87354 1.26296 1.04150 0.94297 0.95594 1.70113 1.34907 1.01569 1.43285 0.84885 0.75743 0.78343 0.79001 1.19090 1.19234 1.18825 1.91321 1.21564 1.22913 1.76424 0.91693 0.89875 0.91581 0.94903 0.90169 0.92369 0.92451 0.89945 0.95083 0.86324 0.86259 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.25 71.98 0.59 -2.11 16 2 C -0.05 -1.52 0.65 -52.18 -0.03 -1.55 16 3 C -0.13 -3.82 8.39 71.98 0.60 -3.22 16 4 C -0.14 -4.09 8.04 71.98 0.58 -3.51 16 5 C 0.05 1.86 2.95 31.14 0.09 1.95 16 6 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 7 C -0.15 -5.85 5.34 30.72 0.16 -5.69 16 8 C 0.40 21.36 8.15 87.98 0.72 22.08 16 9 O -0.62 -36.91 17.69 -3.07 -0.05 -36.97 16 10 N -0.31 -17.78 3.76 -305.93 -1.15 -18.93 16 11 C -0.36 -21.56 9.97 84.04 0.84 -20.72 16 12 H 0.11 6.54 7.73 -2.91 -0.02 6.51 16 13 C 0.00 0.13 5.48 84.92 0.47 0.60 16 14 N -0.86 -48.87 11.86 21.66 0.26 -48.62 16 15 Si 1.00 42.68 29.56 68.60 2.03 44.71 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 19 O -0.12 -6.11 8.76 -38.47 -0.34 -6.45 16 20 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.07 1.26 7.17 -2.39 -0.02 1.24 16 23 H 0.03 1.16 7.94 -2.39 -0.02 1.14 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.62 6.14 -2.39 -0.01 1.61 16 27 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.03 1.13 7.59 -2.39 -0.02 1.11 16 29 H 0.12 3.97 5.70 -2.39 -0.01 3.95 16 30 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -71.71 257.75 5.87 -65.84 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.11 Total: 12.57 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.02 Total: -12.16 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -0.89 Total: -67.54 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.39 Total: -43.42 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -71.71 5.87 -65.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261300093.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.354 kcal (2) G-P(sol) polarization free energy of solvation -71.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds