Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46789 * 2 1 4 4 C 1.52999 * 109.46910 * 119.99554 * 2 1 3 5 5 H 1.09002 * 110.70757 * 300.70441 * 4 2 1 6 6 C 1.54606 * 110.79234 * 177.37157 * 4 2 1 7 7 C 1.51720 * 102.86519 * 216.39394 * 6 4 2 8 8 O 1.21286 * 126.23851 * 195.20707 * 7 6 4 9 9 N 1.34769 * 107.51902 * 15.20412 * 7 6 4 10 10 C 1.46496 * 124.16658 * 181.17838 * 9 7 6 11 11 C 1.50703 * 109.47117 * 74.99928 * 10 9 7 12 12 H 1.08001 * 119.99631 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99895 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00476 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99932 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47566 * 89.99292 * 15 13 11 17 17 H 1.48495 * 109.47067 * 209.99771 * 15 13 11 18 18 H 1.48501 * 109.46908 * 329.99547 * 15 13 11 19 19 O 1.41464 * 111.67270 * 1.17928 * 9 7 6 20 20 H 1.08997 * 109.47736 * 300.00584 * 1 2 3 21 21 H 1.09007 * 109.46931 * 60.00522 * 1 2 3 22 22 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47235 * 239.99997 * 2 1 3 24 24 H 1.09004 * 109.46925 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47535 * 299.99604 * 3 2 1 26 26 H 1.08997 * 109.47234 * 59.99997 * 3 2 1 27 27 H 1.09002 * 110.73221 * 334.73993 * 6 4 2 28 28 H 1.09006 * 110.72789 * 97.86833 * 6 4 2 29 29 H 1.08998 * 109.47810 * 195.00416 * 10 9 7 30 30 H 1.09010 * 109.47064 * 315.00473 * 10 9 7 31 31 H 0.97003 * 120.00227 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6775 -0.2303 2.1526 6 6 3.5841 -0.7967 1.2475 7 6 3.8565 -2.1573 1.8609 8 8 4.9192 -2.5480 2.2960 9 7 2.7024 -2.8528 1.8342 10 6 2.5477 -4.2106 2.3618 11 6 2.5103 -4.1633 3.8676 12 1 2.5930 -3.2163 4.3803 13 6 2.3704 -5.3289 4.5907 14 7 2.2692 -6.4819 3.9664 15 14 2.3233 -5.2701 6.4572 16 1 0.9186 -5.1119 6.9123 17 1 2.8825 -6.5314 7.0064 18 1 3.1314 -4.1202 6.9368 19 8 1.6587 -2.1100 1.2341 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.9717 -0.7475 0.2299 28 1 4.0100 -0.0018 1.8600 29 1 1.6188 -4.6419 1.9886 30 1 3.3888 -4.8241 2.0384 31 1 2.1704 -7.3019 4.4752 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261310778.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = -39.607216 kcal Electronic energy + Delta-G solvation = -14512.344556 eV Core-core repulsion = 11988.762376 eV Total energy + Delta-G solvation = -2523.582180 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93074 -37.05823 -35.28462 -33.33783 -31.23020 -30.40207 -27.12044 -26.98198 -23.87061 -22.59057 -20.29830 -19.69187 -16.71130 -16.59336 -16.18364 -15.20557 -14.66690 -14.37752 -13.98308 -13.67804 -13.22727 -12.95902 -12.76765 -12.28939 -12.23112 -11.91107 -11.51115 -11.39933 -11.05821 -10.97209 -10.81330 -10.73872 -10.31673 -10.21582 -9.65453 -9.05711 -8.51264 -7.69490 -6.12146 -4.17730 2.77848 3.22673 3.29359 3.35036 3.41543 4.33409 4.40824 4.55918 4.80386 4.94715 5.06079 5.22490 5.26599 5.34218 5.54487 5.58701 5.73654 5.79662 5.91477 5.94524 6.00781 6.28661 6.29239 6.96016 7.14498 7.35878 7.83194 8.03727 8.21254 8.73500 8.91407 9.47117 10.95797 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042331 B = 0.007865 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.299230 B = 3559.313237 C = 3756.817809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.146 4.146 4 C 0.064 3.936 5 H 0.082 0.918 6 C -0.182 4.182 7 C 0.503 3.497 8 O -0.517 6.517 9 N -0.460 5.460 10 C 0.270 3.730 11 C -0.532 4.532 12 H 0.061 0.939 13 C 0.063 3.937 14 N -0.895 5.895 15 Si 0.905 3.095 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.273 1.273 19 O -0.157 6.157 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.553 13.339 -7.507 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.203 4.203 4 C 0.005 3.995 5 H 0.100 0.900 6 C -0.223 4.223 7 C 0.289 3.711 8 O -0.394 6.394 9 N -0.239 5.239 10 C 0.155 3.845 11 C -0.571 4.571 12 H 0.079 0.921 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.732 3.268 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.197 1.197 19 O -0.160 6.160 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.259 12.730 -7.303 14.849 hybrid contribution -0.159 0.146 1.022 1.045 sum -2.417 12.877 -6.280 14.529 Atomic orbital electron populations 1.21804 0.94291 1.02743 1.01574 1.21213 0.96893 0.95917 0.96773 1.21815 1.01387 0.94911 1.02213 1.23336 0.93217 0.83745 0.99165 0.89968 1.23127 0.96644 0.98513 1.03984 1.20612 0.83755 0.87003 0.79726 1.90733 1.25408 1.74728 1.48534 1.51143 1.01426 1.14574 1.56775 1.19569 0.99208 0.72045 0.93646 1.21427 1.51132 0.93829 0.90718 0.92083 1.24914 0.94751 0.94948 0.99315 1.69922 1.49418 0.97960 1.36027 0.86380 0.78242 0.77704 0.84470 1.20467 1.20897 1.19728 1.90921 1.30639 1.16060 1.78344 0.92551 0.92618 0.91713 0.90137 0.92174 0.92037 0.92314 0.87666 0.87695 0.93336 0.92914 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.10 37.16 0.34 -1.24 16 2 C -0.09 -0.99 2.63 -90.62 -0.24 -1.23 16 3 C -0.15 -1.26 9.00 37.16 0.33 -0.92 16 4 C 0.06 0.95 3.23 -25.89 -0.08 0.87 16 5 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 6 C -0.18 -2.79 5.57 -26.54 -0.15 -2.93 16 7 C 0.50 11.16 8.09 -10.49 -0.08 11.08 16 8 O -0.52 -13.39 17.81 5.55 0.10 -13.29 16 9 N -0.46 -10.80 3.71 -61.10 -0.23 -11.03 16 10 C 0.27 7.34 5.98 -5.19 -0.03 7.31 16 11 C -0.53 -15.53 9.27 -34.44 -0.32 -15.85 16 12 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 13 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 15 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 O -0.16 -3.12 11.67 -11.40 -0.13 -3.25 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 22 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.49 7.35 -51.93 -0.38 0.11 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.11 1.37 7.88 -51.93 -0.41 0.96 16 28 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.05 1.52 8.14 -51.92 -0.42 1.10 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 268.15 15.07 4.04 4.04 Total: -1.00 -32.43 268.15 -5.38 -37.81 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -4.55 Total: -4.37 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.33 Total: -1.20 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.51 Total: -36.81 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.03 Total: -16.54 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.43 -5.38 -37.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261310778.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.794 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds