Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46789 * 2 1 4 4 C 1.52999 * 109.46910 * 119.99554 * 2 1 3 5 5 H 1.09002 * 110.70757 * 300.70441 * 4 2 1 6 6 C 1.54606 * 110.79234 * 177.37157 * 4 2 1 7 7 C 1.51720 * 102.86519 * 216.39394 * 6 4 2 8 8 O 1.21286 * 126.23851 * 195.20707 * 7 6 4 9 9 N 1.34769 * 107.51902 * 15.20412 * 7 6 4 10 10 C 1.46496 * 124.16658 * 181.17838 * 9 7 6 11 11 C 1.50703 * 109.47117 * 74.99928 * 10 9 7 12 12 H 1.08001 * 119.99631 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99895 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00476 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99932 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47566 * 89.99292 * 15 13 11 17 17 H 1.48495 * 109.47067 * 209.99771 * 15 13 11 18 18 H 1.48501 * 109.46908 * 329.99547 * 15 13 11 19 19 O 1.41464 * 111.67270 * 1.17928 * 9 7 6 20 20 H 1.08997 * 109.47736 * 300.00584 * 1 2 3 21 21 H 1.09007 * 109.46931 * 60.00522 * 1 2 3 22 22 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47235 * 239.99997 * 2 1 3 24 24 H 1.09004 * 109.46925 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47535 * 299.99604 * 3 2 1 26 26 H 1.08997 * 109.47234 * 59.99997 * 3 2 1 27 27 H 1.09002 * 110.73221 * 334.73993 * 6 4 2 28 28 H 1.09006 * 110.72789 * 97.86833 * 6 4 2 29 29 H 1.08998 * 109.47810 * 195.00416 * 10 9 7 30 30 H 1.09010 * 109.47064 * 315.00473 * 10 9 7 31 31 H 0.97003 * 120.00227 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6775 -0.2303 2.1526 6 6 3.5841 -0.7967 1.2475 7 6 3.8565 -2.1573 1.8609 8 8 4.9192 -2.5480 2.2960 9 7 2.7024 -2.8528 1.8342 10 6 2.5477 -4.2106 2.3618 11 6 2.5103 -4.1633 3.8676 12 1 2.5930 -3.2163 4.3803 13 6 2.3704 -5.3289 4.5907 14 7 2.2692 -6.4819 3.9664 15 14 2.3233 -5.2701 6.4572 16 1 0.9186 -5.1119 6.9123 17 1 2.8825 -6.5314 7.0064 18 1 3.1314 -4.1202 6.9368 19 8 1.6587 -2.1100 1.2341 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.9717 -0.7475 0.2299 28 1 4.0100 -0.0018 1.8600 29 1 1.6188 -4.6419 1.9886 30 1 3.3888 -4.8241 2.0384 31 1 2.1704 -7.3019 4.4752 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261310778.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = -61.575226 kcal Electronic energy + Delta-G solvation = -14513.297160 eV Core-core repulsion = 11988.762376 eV Total energy + Delta-G solvation = -2524.534784 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51037 -38.68824 -36.62595 -35.34531 -33.11693 -31.81272 -28.95103 -27.86813 -25.54434 -24.24934 -21.65767 -21.10371 -18.81226 -18.14284 -17.97701 -16.66662 -16.56729 -15.77012 -15.58284 -15.03364 -14.63326 -14.44965 -14.05992 -13.82561 -13.65307 -13.23258 -13.01920 -12.91832 -12.69573 -12.46509 -12.34328 -11.91222 -11.80953 -11.74772 -11.36894 -10.85803 -10.69408 -9.56761 -8.32258 -6.48744 1.09099 1.35809 1.38176 1.49383 1.51937 2.34279 2.93242 3.01851 3.38421 3.59139 3.91680 3.97205 4.29445 4.36371 4.60030 4.71940 4.79902 4.83735 4.89213 4.93978 5.05663 5.09424 5.24408 5.33208 5.44437 5.49800 5.63325 5.84147 6.46381 6.55794 7.03137 7.23556 8.75345 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042331 B = 0.007865 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.299230 B = 3559.313237 C = 3756.817809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.142 4.142 4 C 0.057 3.943 5 H 0.089 0.911 6 C -0.160 4.160 7 C 0.487 3.513 8 O -0.565 6.565 9 N -0.476 5.476 10 C 0.282 3.718 11 C -0.556 4.556 12 H 0.052 0.948 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.975 3.025 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.273 1.273 19 O -0.165 6.165 20 H 0.060 0.940 21 H 0.078 0.922 22 H 0.039 0.961 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.034 0.966 30 H 0.023 0.977 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 15.593 -7.453 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.199 4.199 4 C -0.001 4.001 5 H 0.106 0.894 6 C -0.200 4.200 7 C 0.276 3.724 8 O -0.446 6.446 9 N -0.253 5.253 10 C 0.164 3.836 11 C -0.594 4.594 12 H 0.070 0.930 13 C -0.186 4.186 14 N -0.562 5.562 15 Si 0.798 3.202 16 H -0.188 1.188 17 H -0.197 1.197 18 H -0.198 1.198 19 O -0.169 6.169 20 H 0.079 0.921 21 H 0.097 0.903 22 H 0.058 0.942 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.713 15.014 -7.276 16.903 hybrid contribution -0.062 -0.517 0.926 1.063 sum -2.775 14.497 -6.349 16.068 Atomic orbital electron populations 1.21817 0.94080 1.01575 1.02991 1.21261 0.97061 0.97194 0.94535 1.21819 1.01954 0.92658 1.03470 1.23844 0.93164 0.81341 1.01734 0.89356 1.23155 0.96946 0.94405 1.05473 1.21769 0.82507 0.89226 0.78900 1.90685 1.27005 1.76359 1.50535 1.50926 1.03264 1.14271 1.56856 1.19032 0.97097 0.74307 0.93123 1.21625 1.52202 0.93861 0.91751 0.93015 1.25862 0.93806 0.94357 1.04624 1.70022 1.49396 0.98670 1.38145 0.85302 0.78970 0.77931 0.77950 1.18791 1.19739 1.19758 1.90910 1.29637 1.18611 1.77760 0.92117 0.90294 0.94165 0.89975 0.91300 0.90194 0.91732 0.84601 0.84663 0.94785 0.95956 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.10 71.98 0.65 -2.17 16 2 C -0.08 -1.57 2.63 -10.79 -0.03 -1.60 16 3 C -0.14 -1.82 9.00 71.98 0.65 -1.17 16 4 C 0.06 1.57 3.23 31.14 0.10 1.67 16 5 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 6 C -0.16 -4.50 5.57 30.72 0.17 -4.33 16 7 C 0.49 21.75 8.09 87.98 0.71 22.46 16 8 O -0.57 -30.04 17.81 -3.05 -0.05 -30.09 16 9 N -0.48 -22.91 3.71 -465.60 -1.73 -24.64 16 10 C 0.28 16.05 5.98 85.63 0.51 16.57 16 11 C -0.56 -33.41 9.27 25.60 0.24 -33.18 16 12 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 13 C 0.01 0.79 5.46 84.66 0.46 1.25 16 14 N -0.92 -55.77 13.29 21.45 0.28 -55.49 16 15 Si 0.98 45.40 29.54 68.60 2.03 47.43 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 19 O -0.17 -6.58 11.67 -38.48 -0.45 -7.02 16 20 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.04 0.96 7.87 -2.39 -0.02 0.94 16 23 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 0.79 7.35 -2.39 -0.02 0.77 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.14 3.05 7.88 -2.39 -0.02 3.03 16 28 H 0.14 3.06 8.14 -2.38 -0.02 3.04 16 29 H 0.03 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.02 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -72.76 268.15 4.65 -68.12 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.10 Total: 2.20 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 3.47 Total: -0.50 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.44 Total: -80.12 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.50 Total: -37.12 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -72.76 4.65 -68.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261310778.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.541 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds