Wall clock time and date at job start Mon Mar 30 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99633 * 2 1 4 4 H 1.48505 * 109.46902 * 239.99929 * 3 2 1 5 5 H 1.48498 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46934 * 119.99974 * 3 2 1 7 7 C 1.37868 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00389 * 0.02562 * 7 2 1 10 10 C 1.50703 * 108.74374 * 63.07099 * 9 7 2 11 11 O 1.20828 * 120.00565 * 121.54185 * 10 9 7 12 12 O 1.34236 * 119.99949 * 301.54665 * 10 9 7 13 13 C 1.54166 * 108.85845 * 181.52626 * 9 7 2 14 14 C 1.53870 * 112.00324 * 79.26214 * 13 9 7 15 15 C 1.50815 * 111.59430 * 319.11501 * 14 13 9 16 16 N 1.47641 * 108.08613 * 95.00282 * 15 14 13 17 17 C 1.39785 * 114.75915 * 277.17212 * 16 15 14 18 18 C 1.50753 * 108.85612 * 304.61470 * 9 7 2 19 19 H 0.97001 * 120.00121 * 0.02562 * 1 2 3 20 20 H 0.96697 * 116.99586 * 179.97438 * 12 10 9 21 21 H 1.09002 * 108.98578 * 199.93184 * 13 9 7 22 22 H 1.08994 * 108.98126 * 318.73423 * 13 9 7 23 23 H 1.08999 * 109.12668 * 198.52722 * 14 13 9 24 24 H 1.09001 * 109.00064 * 79.61534 * 14 13 9 25 25 H 1.08992 * 109.74538 * 335.33898 * 15 14 13 26 26 H 1.08994 * 109.74350 * 214.66045 * 15 14 13 27 27 H 1.00900 * 110.99545 * 150.31949 * 16 15 14 28 28 H 1.08997 * 109.01606 * 182.86394 * 17 16 15 29 29 H 1.08991 * 109.02063 * 301.76610 * 17 16 15 30 30 H 1.08999 * 109.54644 * 212.34549 * 18 9 7 31 31 H 1.09000 * 109.54487 * 92.07189 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 0.4498 -2.5957 -1.2721 11 8 0.6271 -3.5206 -2.0290 12 8 -0.4609 -1.6539 -1.5649 13 6 2.2651 -3.6597 0.0400 14 6 2.8115 -3.8999 1.4583 15 6 3.0917 -2.6014 2.1724 16 7 1.9102 -2.2643 2.9911 17 6 0.8800 -1.6239 2.2965 18 6 0.3053 -2.5156 1.1743 19 1 -0.4850 0.8400 -0.0004 20 1 -0.9499 -1.7585 -2.3925 21 1 1.7770 -4.5691 -0.3106 22 1 3.0975 -3.4260 -0.6236 23 1 3.7344 -4.4762 1.3926 24 1 2.0781 -4.4690 2.0295 25 1 3.2720 -1.8116 1.4432 26 1 3.9646 -2.7155 2.8150 27 1 2.1760 -1.7380 3.8099 28 1 0.0820 -1.3742 2.9956 29 1 1.2664 -0.7050 1.8558 30 1 0.1956 -3.5366 1.5398 31 1 -0.6666 -2.1313 0.8648 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261316233.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:28 Heat of formation + Delta-G solvation = -66.334042 kcal Electronic energy + Delta-G solvation = -15829.160737 eV Core-core repulsion = 13304.419595 eV Total energy + Delta-G solvation = -2524.741142 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.44231 -37.51595 -34.58317 -33.31472 -32.16077 -30.34109 -26.14811 -24.62586 -24.00810 -20.98313 -19.53286 -18.06447 -16.91416 -16.17428 -15.82139 -14.80175 -14.50649 -14.09779 -13.71442 -13.20102 -12.92272 -12.35488 -11.95746 -11.60848 -11.36441 -11.09682 -10.74157 -10.50212 -10.19270 -10.14870 -10.00266 -9.80348 -9.37375 -9.25760 -8.98265 -8.80160 -8.47796 -6.96030 -6.13144 -4.22697 3.18052 3.24435 3.27101 3.82140 4.25799 4.72156 5.11895 5.32533 5.84529 6.03218 6.14861 6.43344 6.48921 6.55757 6.67385 6.76286 6.96491 7.00127 7.09680 7.10910 7.31270 7.50217 7.61006 7.69466 7.78063 7.95636 8.10264 8.39166 8.60768 8.66282 9.32121 9.54450 10.82932 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.020098 C = 0.013998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.538111 B = 1392.838041 C = 1999.758071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.069 0.931 9 C 0.079 3.921 10 C 0.488 3.512 11 O -0.586 6.586 12 O -0.451 6.451 13 C -0.093 4.093 14 C -0.103 4.103 15 C 0.043 3.957 16 N -0.704 5.704 17 C 0.079 3.921 18 C -0.077 4.077 19 H 0.264 0.736 20 H 0.351 0.649 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.041 0.959 27 H 0.323 0.677 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 -0.803 3.075 3.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.138 4.138 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.087 0.913 9 C 0.078 3.922 10 C 0.335 3.665 11 O -0.481 6.481 12 O -0.253 6.253 13 C -0.131 4.131 14 C -0.141 4.141 15 C -0.085 4.085 16 N -0.335 5.335 17 C -0.051 4.051 18 C -0.115 4.115 19 H 0.074 0.926 20 H 0.204 0.796 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.140 0.860 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.342 -1.421 3.130 3.690 hybrid contribution 0.472 1.659 -0.805 1.904 sum 1.814 0.238 2.325 2.959 Atomic orbital electron populations 1.69975 1.05210 1.26526 1.43569 1.24942 0.95041 0.98921 0.94938 0.86748 0.79852 0.83273 0.78818 1.20196 1.21006 1.20118 1.20840 0.92649 0.88733 1.53798 0.91268 1.17964 0.91430 0.95522 0.87293 1.25344 0.75771 0.76375 0.89046 1.90492 1.68334 1.36076 1.53207 1.85483 1.49102 1.49516 1.41234 1.21764 0.98089 0.97388 0.95817 1.21254 0.99279 0.97499 0.96049 1.22052 0.90398 0.99259 0.96777 1.57529 1.11245 1.53646 1.11056 1.20907 0.91606 0.98534 0.94021 1.21197 0.99337 0.96517 0.94461 0.92573 0.79625 0.93312 0.93155 0.93779 0.92063 0.89237 0.94064 0.86008 0.95143 0.90905 0.95180 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.33 8.18 55.43 0.45 -19.87 16 2 C 0.07 1.69 3.04 -17.82 -0.05 1.63 16 3 Si 0.89 19.44 29.54 -169.99 -5.02 14.42 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.52 -12.85 4.57 -34.45 -0.16 -13.01 16 8 H 0.07 1.71 6.15 -52.48 -0.32 1.39 16 9 C 0.08 1.89 0.49 -157.33 -0.08 1.82 16 10 C 0.49 12.25 6.74 36.01 0.24 12.49 16 11 O -0.59 -15.48 16.30 -18.75 -0.31 -15.78 16 12 O -0.45 -10.63 9.52 -39.27 -0.37 -11.00 16 13 C -0.09 -2.04 4.45 -25.67 -0.11 -2.16 16 14 C -0.10 -1.97 5.41 -27.37 -0.15 -2.12 16 15 C 0.04 0.82 6.21 -4.51 -0.03 0.79 16 16 N -0.70 -13.61 6.07 -118.54 -0.72 -14.33 16 17 C 0.08 1.71 5.50 -6.74 -0.04 1.67 16 18 C -0.08 -1.77 4.21 -27.11 -0.11 -1.88 16 19 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 20 H 0.35 6.73 9.10 45.56 0.41 7.14 16 21 H 0.05 1.09 7.31 -51.93 -0.38 0.71 16 22 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.20 7.27 -51.93 -0.38 0.82 16 25 H 0.09 1.91 3.94 -51.93 -0.20 1.71 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.32 5.52 8.85 -39.29 -0.35 5.17 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.73 3.97 -51.93 -0.21 1.52 16 30 H 0.03 0.67 7.11 -51.93 -0.37 0.31 16 31 H 0.07 1.85 6.49 -51.93 -0.34 1.52 16 LS Contribution 232.40 15.07 3.50 3.50 Total: -1.00 -27.33 232.40 -5.90 -33.22 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -2.94 Total: 10.60 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -0.49 Total: -0.76 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -0.27 Total: -34.20 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.68 Total: -26.78 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.33 -5.90 -33.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316233.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.110 kcal (2) G-P(sol) polarization free energy of solvation -27.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds