Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47029 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99669 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00182 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99786 * 180.02562 * 11 10 9 14 14 H 1.08999 * 110.01950 * 58.60622 * 13 11 10 15 15 C 1.54275 * 110.02866 * 297.16507 * 13 11 10 16 16 C 1.54894 * 104.19327 * 217.10590 * 15 13 11 17 17 C 1.54888 * 102.74824 * 37.94204 * 16 15 13 18 18 C 1.53872 * 110.03198 * 179.97438 * 13 11 10 19 19 H 1.08996 * 110.03355 * 359.97438 * 18 13 11 20 20 O 1.42902 * 110.03071 * 238.56693 * 18 13 11 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 23 23 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 24 24 H 0.97003 * 120.00111 * 0.02562 * 10 9 7 25 25 H 1.08995 * 110.48375 * 335.78496 * 15 13 11 26 26 H 1.09000 * 110.48389 * 98.43189 * 15 13 11 27 27 H 1.09003 * 110.75685 * 279.63131 * 16 15 13 28 28 H 1.08997 * 110.91423 * 156.32836 * 16 15 13 29 29 H 1.08996 * 110.48753 * 203.38100 * 17 16 15 30 30 H 1.08999 * 110.60219 * 80.78877 * 17 16 15 31 31 H 0.96699 * 113.99709 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7332 -6.0288 -0.0005 14 1 3.3805 -5.9658 0.8742 15 6 3.5806 -6.0001 -1.2894 16 6 3.7654 -7.4938 -1.6556 17 6 2.3912 -8.1078 -1.2905 18 6 1.9770 -7.3688 -0.0006 19 1 0.9017 -7.1907 -0.0006 20 8 2.3457 -8.1390 1.1452 21 1 -0.4849 -0.8401 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 3.1569 -3.4354 -0.0002 25 1 3.0493 -5.4755 -2.0835 26 1 4.5463 -5.5313 -1.1007 27 1 4.5597 -7.9424 -1.0589 28 1 3.9705 -7.6110 -2.7197 29 1 2.4889 -9.1770 -1.1027 30 1 1.6666 -7.9255 -2.0841 31 1 1.9022 -8.9965 1.2020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306162447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = -114.365905 kcal Electronic energy + Delta-G solvation = -14264.242931 eV Core-core repulsion = 11737.418971 eV Total energy + Delta-G solvation = -2526.823960 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.82789 -37.59053 -34.84553 -34.44754 -32.44196 -29.48876 -27.61951 -26.48435 -22.97212 -21.24847 -20.89890 -19.23234 -17.80508 -17.00319 -16.03984 -15.73320 -15.07796 -14.71666 -14.03502 -13.76325 -13.28350 -12.87814 -12.54756 -12.40734 -12.07269 -12.01649 -11.31068 -11.19122 -11.02958 -10.79849 -10.73554 -10.60008 -10.18434 -9.83758 -9.13889 -8.79148 -8.69872 -8.02970 -6.52917 -4.26453 3.23727 3.37030 3.40499 3.56050 3.82450 4.31799 4.44345 4.52004 4.70926 4.95362 5.26144 5.29294 5.39336 5.48061 5.53531 5.63420 5.79992 5.82691 5.93042 5.99732 6.19030 6.26491 6.97743 7.20217 7.29095 7.63853 7.68499 8.25262 8.44132 8.70097 8.93754 9.47457 10.87341 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057982 B = 0.006319 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.793172 B = 4429.741413 C = 4654.978571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.623 4.623 8 H 0.058 0.942 9 C 0.239 3.761 10 N -0.704 5.704 11 C 0.507 3.493 12 O -0.558 6.558 13 C -0.109 4.109 14 H 0.106 0.894 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.155 4.155 18 C 0.104 3.896 19 H 0.086 0.914 20 O -0.567 6.567 21 H 0.273 0.727 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.394 0.606 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 -13.901 -2.316 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.662 4.662 8 H 0.076 0.924 9 C 0.117 3.883 10 N -0.351 5.351 11 C 0.292 3.708 12 O -0.438 6.438 13 C -0.131 4.131 14 H 0.124 0.876 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.193 4.193 18 C 0.045 3.955 19 H 0.103 0.897 20 O -0.373 6.373 21 H 0.083 0.917 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.227 0.773 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 7.363 -11.837 -2.205 14.113 hybrid contribution 0.312 -2.056 -0.071 2.081 sum 7.675 -13.892 -2.276 16.034 Atomic orbital electron populations 1.70732 1.06890 1.31062 1.45024 1.25894 0.96424 1.02777 0.93263 0.83402 0.74501 0.74559 0.76896 1.21246 1.20774 1.21350 1.22094 0.94608 0.91481 1.57976 0.92405 1.19190 0.89055 0.83569 0.96460 1.46238 1.11092 1.05662 1.72115 1.20291 0.89206 0.84456 0.76887 1.90611 1.17016 1.84646 1.51553 1.21818 0.97294 0.92989 1.00977 0.87620 1.22350 0.99579 0.97345 0.95887 1.22445 0.97170 0.95027 1.01000 1.23091 0.97927 0.99765 0.98489 1.22411 0.99690 0.89226 0.84148 0.89657 1.86484 1.71015 1.33808 1.45956 0.91690 0.96537 0.96510 0.77323 0.90753 0.90516 0.91124 0.91348 0.91124 0.90720 0.77781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.65 55.43 0.76 -26.77 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.58 29.90 -169.99 -5.08 19.50 16 4 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.62 -17.32 9.28 -34.44 -0.32 -17.64 16 8 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 9 C 0.24 6.40 4.74 -5.19 -0.02 6.37 16 10 N -0.70 -15.29 5.49 -61.47 -0.34 -15.63 16 11 C 0.51 10.45 6.99 -10.99 -0.08 10.37 16 12 O -0.56 -13.56 15.21 5.56 0.08 -13.48 16 13 C -0.11 -1.70 3.11 -90.65 -0.28 -1.98 16 14 H 0.11 1.60 7.95 -51.93 -0.41 1.19 16 15 C -0.11 -1.45 6.31 -25.06 -0.16 -1.61 16 16 C -0.12 -1.27 6.91 -24.74 -0.17 -1.44 16 17 C -0.15 -1.75 6.56 -25.04 -0.16 -1.91 16 18 C 0.10 1.49 3.86 -25.58 -0.10 1.40 16 19 H 0.09 1.43 6.39 -51.93 -0.33 1.09 16 20 O -0.57 -7.53 13.21 -35.23 -0.47 -8.00 16 21 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 22 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 23 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 24 H 0.39 7.47 8.32 -40.82 -0.34 7.13 16 25 H 0.07 1.03 7.85 -51.93 -0.41 0.63 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.38 3.21 9.11 45.56 0.41 3.63 16 LS Contribution 263.10 15.07 3.96 3.96 Total: -1.00 -33.33 263.10 -5.98 -39.31 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.51 Total: 7.03 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.39 Total: -5.92 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.42 Total: -42.40 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.38 Total: -21.48 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.33 -5.98 -39.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306162447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.059 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds