Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47029 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99669 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00182 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99786 * 180.02562 * 11 10 9 14 14 H 1.08999 * 110.01950 * 58.60622 * 13 11 10 15 15 C 1.54275 * 110.02866 * 297.16507 * 13 11 10 16 16 C 1.54894 * 104.19327 * 217.10590 * 15 13 11 17 17 C 1.54888 * 102.74824 * 37.94204 * 16 15 13 18 18 C 1.53872 * 110.03198 * 179.97438 * 13 11 10 19 19 H 1.08996 * 110.03355 * 359.97438 * 18 13 11 20 20 O 1.42902 * 110.03071 * 238.56693 * 18 13 11 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 23 23 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 24 24 H 0.97003 * 120.00111 * 0.02562 * 10 9 7 25 25 H 1.08995 * 110.48375 * 335.78496 * 15 13 11 26 26 H 1.09000 * 110.48389 * 98.43189 * 15 13 11 27 27 H 1.09003 * 110.75685 * 279.63131 * 16 15 13 28 28 H 1.08997 * 110.91423 * 156.32836 * 16 15 13 29 29 H 1.08996 * 110.48753 * 203.38100 * 17 16 15 30 30 H 1.08999 * 110.60219 * 80.78877 * 17 16 15 31 31 H 0.96699 * 113.99709 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7332 -6.0288 -0.0005 14 1 3.3805 -5.9658 0.8742 15 6 3.5806 -6.0001 -1.2894 16 6 3.7654 -7.4938 -1.6556 17 6 2.3912 -8.1078 -1.2905 18 6 1.9770 -7.3688 -0.0006 19 1 0.9017 -7.1907 -0.0006 20 8 2.3457 -8.1390 1.1452 21 1 -0.4849 -0.8401 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 3.1569 -3.4354 -0.0002 25 1 3.0493 -5.4755 -2.0835 26 1 4.5463 -5.5313 -1.1007 27 1 4.5597 -7.9424 -1.0589 28 1 3.9705 -7.6110 -2.7197 29 1 2.4889 -9.1770 -1.1027 30 1 1.6666 -7.9255 -2.0841 31 1 1.9022 -8.9965 1.2020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306162447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = -141.184612 kcal Electronic energy + Delta-G solvation = -14265.405877 eV Core-core repulsion = 11737.418971 eV Total energy + Delta-G solvation = -2527.986906 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.30932 -38.94867 -36.48633 -35.89996 -34.48019 -30.81556 -28.64095 -28.44706 -25.03765 -22.74408 -21.88935 -20.81305 -19.43041 -18.63572 -17.33517 -17.12907 -16.57960 -16.18539 -15.77166 -15.49686 -14.76192 -14.43512 -14.18322 -14.02881 -13.49022 -13.25072 -13.13223 -12.59049 -12.47331 -12.08064 -11.89735 -11.79518 -11.58765 -11.10434 -10.89804 -10.79592 -10.68431 -10.04512 -8.82923 -6.58585 1.54907 1.55827 1.64597 1.81799 2.24477 2.55443 3.05553 3.24042 3.44953 3.53812 3.93160 4.14890 4.30665 4.40526 4.43598 4.67227 4.72043 4.75894 4.90242 4.92133 5.01343 5.11201 5.16552 5.35387 5.38830 5.50509 6.03943 6.27590 6.69919 6.85188 7.16686 7.33675 8.56510 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057982 B = 0.006319 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.793172 B = 4429.741413 C = 4654.978571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.033 4.033 3 Si 1.134 2.866 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.630 4.630 8 H 0.077 0.923 9 C 0.251 3.749 10 N -0.699 5.699 11 C 0.503 3.497 12 O -0.601 6.601 13 C -0.102 4.102 14 H 0.116 0.884 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.149 4.149 18 C 0.103 3.897 19 H 0.052 0.948 20 O -0.576 6.576 21 H 0.253 0.747 22 H -0.018 1.018 23 H -0.015 1.015 24 H 0.410 0.590 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 -14.570 -2.706 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.231 4.231 3 Si 0.952 3.048 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.668 4.668 8 H 0.095 0.905 9 C 0.128 3.872 10 N -0.348 5.348 11 C 0.290 3.710 12 O -0.483 6.483 13 C -0.124 4.124 14 H 0.134 0.866 15 C -0.150 4.150 16 C -0.148 4.148 17 C -0.187 4.187 18 C 0.044 3.956 19 H 0.070 0.930 20 O -0.385 6.385 21 H 0.063 0.937 22 H 0.000 1.000 23 H 0.003 0.997 24 H 0.246 0.754 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 10.243 -12.569 -2.592 16.420 hybrid contribution -0.631 -1.943 0.089 2.045 sum 9.613 -14.513 -2.503 17.586 Atomic orbital electron populations 1.70882 1.08299 1.29913 1.47443 1.27697 0.96337 1.07236 0.91837 0.82749 0.74183 0.69852 0.77970 1.19620 1.20974 1.18342 1.22454 0.95613 0.91654 1.57067 0.90508 1.18714 0.89413 0.85654 0.93406 1.46020 1.11099 1.05124 1.72565 1.21292 0.89635 0.85083 0.74966 1.90592 1.19426 1.85302 1.53024 1.21869 0.96276 0.91079 1.03136 0.86612 1.22413 0.99632 0.99405 0.93585 1.22454 0.96918 0.92870 1.02531 1.23055 0.98244 1.01028 0.96327 1.22285 0.97628 0.89458 0.86239 0.92966 1.86425 1.71265 1.35146 1.45635 0.93737 1.00036 0.99677 0.75431 0.92290 0.88305 0.89634 0.89378 0.88457 0.91232 0.75396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.65 21.45 0.29 -57.97 16 2 C -0.03 -1.86 5.46 84.65 0.46 -1.40 16 3 Si 1.13 48.26 29.90 68.60 2.05 50.32 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.63 -35.14 9.28 25.60 0.24 -34.90 16 8 H 0.08 3.92 7.60 -2.91 -0.02 3.90 16 9 C 0.25 14.03 4.74 85.63 0.41 14.44 16 10 N -0.70 -30.81 5.49 -466.79 -2.56 -33.37 16 11 C 0.50 21.14 6.99 87.66 0.61 21.75 16 12 O -0.60 -30.62 15.21 -3.01 -0.05 -30.66 16 13 C -0.10 -3.07 3.11 -10.81 -0.03 -3.10 16 14 H 0.12 3.28 7.95 -2.39 -0.02 3.26 16 15 C -0.11 -2.60 6.31 31.67 0.20 -2.40 16 16 C -0.11 -1.95 6.91 31.89 0.22 -1.73 16 17 C -0.15 -2.97 6.56 31.69 0.21 -2.77 16 18 C 0.10 2.85 3.86 31.34 0.12 2.97 16 19 H 0.05 1.79 6.39 -2.39 -0.02 1.78 16 20 O -0.58 -14.18 13.21 -148.98 -1.97 -16.15 16 21 H 0.25 16.51 7.22 -92.71 -0.67 15.84 16 22 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 23 H -0.01 -0.90 8.01 -2.39 -0.02 -0.92 16 24 H 0.41 15.19 8.32 -92.71 -0.77 14.42 16 25 H 0.06 1.55 7.85 -2.39 -0.02 1.53 16 26 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 1.44 8.06 -2.39 -0.02 1.42 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.40 5.92 9.11 -74.06 -0.67 5.24 16 Total: -1.00 -74.47 263.10 -0.01 -74.48 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.20 Total: 20.49 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 2.43 Total: -7.14 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -2.27 Total: -91.34 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -2.01 Total: -46.81 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.05 Total: 50.32 kcal Total: -74.47 -0.01 -74.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306162447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.704 kcal (2) G-P(sol) polarization free energy of solvation -74.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds