Wall clock time and date at job start Mon Mar 30 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99566 * 2 1 4 4 H 1.48506 * 109.47088 * 240.00287 * 3 2 1 5 5 H 1.48500 * 109.47227 * 120.00476 * 3 2 1 6 6 H 1.48500 * 109.47472 * 0.02562 * 3 2 1 7 7 C 1.37868 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00132 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00130 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99819 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00231 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99598 * 179.97438 * 11 10 9 14 14 H 1.09000 * 110.02172 * 332.79266 * 13 11 10 15 15 C 1.54269 * 110.02862 * 211.39775 * 13 11 10 16 16 C 1.54966 * 104.16049 * 217.13755 * 15 13 11 17 17 C 1.54892 * 102.77439 * 37.88848 * 16 15 13 18 18 C 1.53870 * 110.02874 * 94.18416 * 13 11 10 19 19 H 1.09004 * 110.03486 * 238.61432 * 18 13 11 20 20 O 1.42905 * 110.03661 * 359.97438 * 18 13 11 21 21 H 0.97008 * 119.99874 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47271 * 300.00334 * 9 7 2 23 23 H 1.09000 * 109.47114 * 60.00598 * 9 7 2 24 24 H 0.96998 * 119.99895 * 359.97438 * 10 9 7 25 25 H 1.08997 * 110.48970 * 335.79086 * 15 13 11 26 26 H 1.09005 * 110.48135 * 98.43508 * 15 13 11 27 27 H 1.09004 * 110.72153 * 279.58293 * 16 15 13 28 28 H 1.08995 * 110.92211 * 156.29798 * 16 15 13 29 29 H 1.08999 * 110.48844 * 203.39940 * 17 16 15 30 30 H 1.09002 * 110.59690 * 80.81912 * 17 16 15 31 31 H 0.96700 * 114.00290 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 3.1029 1.6965 1.2124 6 1 1.2840 2.7465 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 1 3.6681 -5.7202 -0.4698 15 6 2.1364 -7.2339 -0.7572 16 6 2.6282 -8.4654 0.0447 17 6 2.5488 -7.9732 1.5112 18 6 2.9958 -6.4984 1.4399 19 1 4.0580 -6.4179 1.6714 20 8 2.2346 -5.7108 2.3577 21 1 -0.4850 -0.8401 0.0004 22 1 0.6247 -2.5571 0.8896 23 1 0.6242 -2.5567 -0.8903 24 1 3.1568 -3.4353 -0.0009 25 1 1.0475 -7.1858 -0.7526 26 1 2.5135 -7.2681 -1.7794 27 1 3.6546 -8.7157 -0.2237 28 1 1.9701 -9.3201 -0.1121 29 1 3.2263 -8.5471 2.1434 30 1 1.5274 -8.0446 1.8849 31 1 2.3567 -5.9589 3.2844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306162451.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:52 Heat of formation + Delta-G solvation = -110.437344 kcal Electronic energy + Delta-G solvation = -14419.294056 eV Core-core repulsion = 11892.640451 eV Total energy + Delta-G solvation = -2526.653605 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69956 -37.35800 -34.92452 -34.20472 -32.30641 -29.41639 -27.63762 -26.34826 -22.89876 -21.05598 -20.90078 -19.19580 -17.92214 -16.96444 -15.82994 -15.69235 -14.78776 -14.22119 -14.09089 -13.72389 -13.59704 -12.92028 -12.48288 -12.26748 -11.92139 -11.54452 -11.29438 -11.13657 -10.91583 -10.80422 -10.73485 -10.54634 -10.12321 -9.85841 -8.99311 -8.69185 -8.59536 -7.83800 -6.45260 -4.17581 3.40578 3.42890 3.44921 3.62014 4.07014 4.31231 4.50545 4.55648 4.65454 4.97935 5.20354 5.33634 5.38968 5.45887 5.55176 5.62281 5.70225 5.78530 5.96879 6.04438 6.15730 6.40969 7.12214 7.34856 7.49568 7.75125 7.78908 8.34890 8.60382 8.81971 9.18534 9.56684 10.94992 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060962 B = 0.006577 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.189570 B = 4256.195307 C = 4344.569923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 1.076 2.924 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.621 4.621 8 H 0.055 0.945 9 C 0.242 3.758 10 N -0.705 5.705 11 C 0.525 3.475 12 O -0.555 6.555 13 C -0.112 4.112 14 H 0.092 0.908 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.157 4.157 18 C 0.114 3.886 19 H 0.061 0.939 20 O -0.550 6.550 21 H 0.272 0.728 22 H 0.016 0.984 23 H 0.013 0.987 24 H 0.389 0.611 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.268 -14.485 1.970 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.185 4.185 3 Si 0.904 3.096 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.659 4.659 8 H 0.074 0.926 9 C 0.120 3.880 10 N -0.353 5.353 11 C 0.310 3.690 12 O -0.434 6.434 13 C -0.134 4.134 14 H 0.110 0.890 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.194 4.194 18 C 0.055 3.945 19 H 0.079 0.921 20 O -0.355 6.355 21 H 0.083 0.917 22 H 0.034 0.966 23 H 0.031 0.969 24 H 0.222 0.778 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.996 -12.657 1.412 15.037 hybrid contribution 0.987 -1.883 0.559 2.198 sum 8.983 -14.539 1.971 17.204 Atomic orbital electron populations 1.70752 1.06866 1.31033 1.45207 1.25874 0.96456 1.02708 0.93420 0.83447 0.74782 0.74911 0.76502 1.21341 1.21345 1.20581 1.22083 0.94483 0.91655 1.57669 0.92633 1.19100 0.89075 0.83572 0.96209 1.46181 1.10606 1.05839 1.72633 1.19864 0.89015 0.83835 0.76286 1.90586 1.16986 1.84638 1.51234 1.22021 0.99635 0.96214 0.95529 0.88982 1.22379 1.02839 0.91866 0.97979 1.22406 1.01097 0.97766 0.94484 1.23124 1.02557 0.95993 0.97755 1.22300 0.94046 0.89553 0.88647 0.92076 1.86761 1.69538 1.60052 1.19112 0.91713 0.96626 0.96866 0.77845 0.89304 0.91240 0.91455 0.91172 0.91470 0.90236 0.77956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.65 55.43 0.76 -27.49 16 2 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 3 Si 1.08 25.07 29.90 -169.99 -5.08 19.99 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.62 -17.83 9.28 -34.44 -0.32 -18.15 16 8 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 9 C 0.24 6.79 4.74 -5.19 -0.02 6.77 16 10 N -0.71 -16.23 5.55 -61.47 -0.34 -16.58 16 11 C 0.53 11.37 5.57 -10.98 -0.06 11.31 16 12 O -0.56 -14.28 15.74 5.56 0.09 -14.20 16 13 C -0.11 -1.73 3.29 -90.65 -0.30 -2.03 16 14 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.11 -1.54 6.32 -25.03 -0.16 -1.70 16 16 C -0.12 -1.25 6.91 -24.70 -0.17 -1.42 16 17 C -0.16 -1.71 6.56 -25.07 -0.16 -1.88 16 18 C 0.11 1.51 4.23 -25.61 -0.11 1.40 16 19 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 20 O -0.55 -8.81 11.77 -35.24 -0.41 -9.22 16 21 H 0.27 8.67 7.22 -40.82 -0.29 8.37 16 22 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 23 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 24 H 0.39 7.88 8.32 -40.82 -0.34 7.54 16 25 H 0.09 1.47 6.89 -51.93 -0.36 1.11 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.37 4.05 9.11 45.56 0.42 4.46 16 LS Contribution 262.38 15.07 3.95 3.95 Total: -1.00 -35.56 262.38 -6.00 -41.56 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.56 Total: 7.16 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.40 Total: -5.17 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.42 Total: -44.07 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.33 Total: -23.42 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -35.56 -6.00 -41.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306162451.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.879 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds