Wall clock time and date at job start Mon Mar 30 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99566 * 2 1 4 4 H 1.48506 * 109.47088 * 240.00287 * 3 2 1 5 5 H 1.48500 * 109.47227 * 120.00476 * 3 2 1 6 6 H 1.48500 * 109.47472 * 0.02562 * 3 2 1 7 7 C 1.37868 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00132 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00130 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99819 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00231 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99598 * 179.97438 * 11 10 9 14 14 H 1.09000 * 110.02172 * 332.79266 * 13 11 10 15 15 C 1.54269 * 110.02862 * 211.39775 * 13 11 10 16 16 C 1.54966 * 104.16049 * 217.13755 * 15 13 11 17 17 C 1.54892 * 102.77439 * 37.88848 * 16 15 13 18 18 C 1.53870 * 110.02874 * 94.18416 * 13 11 10 19 19 H 1.09004 * 110.03486 * 238.61432 * 18 13 11 20 20 O 1.42905 * 110.03661 * 359.97438 * 18 13 11 21 21 H 0.97008 * 119.99874 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47271 * 300.00334 * 9 7 2 23 23 H 1.09000 * 109.47114 * 60.00598 * 9 7 2 24 24 H 0.96998 * 119.99895 * 359.97438 * 10 9 7 25 25 H 1.08997 * 110.48970 * 335.79086 * 15 13 11 26 26 H 1.09005 * 110.48135 * 98.43508 * 15 13 11 27 27 H 1.09004 * 110.72153 * 279.58293 * 16 15 13 28 28 H 1.08995 * 110.92211 * 156.29798 * 16 15 13 29 29 H 1.08999 * 110.48844 * 203.39940 * 17 16 15 30 30 H 1.09002 * 110.59690 * 80.81912 * 17 16 15 31 31 H 0.96700 * 114.00290 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 3.1029 1.6965 1.2124 6 1 1.2840 2.7465 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 1 3.6681 -5.7202 -0.4698 15 6 2.1364 -7.2339 -0.7572 16 6 2.6282 -8.4654 0.0447 17 6 2.5488 -7.9732 1.5112 18 6 2.9958 -6.4984 1.4399 19 1 4.0580 -6.4179 1.6714 20 8 2.2346 -5.7108 2.3577 21 1 -0.4850 -0.8401 0.0004 22 1 0.6247 -2.5571 0.8896 23 1 0.6242 -2.5567 -0.8903 24 1 3.1568 -3.4353 -0.0009 25 1 1.0475 -7.1858 -0.7526 26 1 2.5135 -7.2681 -1.7794 27 1 3.6546 -8.7157 -0.2237 28 1 1.9701 -9.3201 -0.1121 29 1 3.2263 -8.5471 2.1434 30 1 1.5274 -8.0446 1.8849 31 1 2.3567 -5.9589 3.2844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306162451.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:52 Heat of formation + Delta-G solvation = -139.839882 kcal Electronic energy + Delta-G solvation = -14420.569046 eV Core-core repulsion = 11892.640451 eV Total energy + Delta-G solvation = -2527.928595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.16258 -38.80229 -36.45110 -35.91166 -34.42998 -30.73475 -28.78309 -28.23393 -25.01827 -22.60716 -21.84017 -20.79218 -19.46642 -18.71234 -17.33104 -17.12141 -16.28364 -15.86045 -15.63908 -15.34223 -14.86489 -14.51418 -14.46890 -14.08389 -13.42909 -13.14309 -12.80516 -12.54383 -12.34761 -11.99816 -11.91548 -11.86772 -11.51744 -11.02985 -10.88957 -10.76501 -10.66962 -9.92313 -8.82458 -6.57471 1.54247 1.63808 1.76683 1.83177 2.42234 2.59374 3.06255 3.22087 3.56230 3.65019 3.91923 4.22440 4.31997 4.39288 4.45025 4.60553 4.72428 4.78127 4.94380 4.96146 5.07703 5.13942 5.19294 5.41100 5.50674 5.54435 6.06531 6.28038 6.83695 6.90715 7.24959 7.47259 8.56636 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060962 B = 0.006577 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.189570 B = 4256.195307 C = 4344.569923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.035 4.035 3 Si 1.133 2.867 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.285 1.285 7 C -0.630 4.630 8 H 0.076 0.924 9 C 0.256 3.744 10 N -0.703 5.703 11 C 0.519 3.481 12 O -0.605 6.605 13 C -0.110 4.110 14 H 0.125 0.875 15 C -0.117 4.117 16 C -0.109 4.109 17 C -0.151 4.151 18 C 0.109 3.891 19 H 0.098 0.902 20 O -0.590 6.590 21 H 0.251 0.749 22 H -0.025 1.025 23 H -0.021 1.021 24 H 0.405 0.595 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.679 -15.269 2.116 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.233 4.233 3 Si 0.951 3.049 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.210 1.210 7 C -0.667 4.667 8 H 0.094 0.906 9 C 0.133 3.867 10 N -0.352 5.352 11 C 0.307 3.693 12 O -0.487 6.487 13 C -0.132 4.132 14 H 0.143 0.857 15 C -0.155 4.155 16 C -0.147 4.147 17 C -0.189 4.189 18 C 0.050 3.950 19 H 0.116 0.884 20 O -0.399 6.399 21 H 0.061 0.939 22 H -0.007 1.007 23 H -0.004 1.004 24 H 0.241 0.759 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 11.453 -13.501 1.570 17.774 hybrid contribution -0.124 -1.711 0.515 1.792 sum 11.330 -15.212 2.085 19.082 Atomic orbital electron populations 1.70907 1.08324 1.29759 1.47551 1.27772 0.96346 1.07343 0.91816 0.82768 0.73901 0.69721 0.78466 1.18622 1.18789 1.21023 1.22439 0.95521 0.91752 1.56982 0.90619 1.18590 0.89434 0.85951 0.92741 1.46016 1.10568 1.05422 1.73191 1.21081 0.89612 0.84571 0.73997 1.90559 1.19828 1.85385 1.52976 1.22257 0.98858 0.93683 0.98356 0.85689 1.22425 1.00457 0.93018 0.99632 1.22423 1.02968 0.96180 0.93090 1.23100 1.02060 0.94925 0.98822 1.22608 0.95715 0.90247 0.86443 0.88383 1.86704 1.70714 1.61434 1.21048 0.93941 1.00711 1.00359 0.75946 0.93265 0.89421 0.88253 0.90257 0.87935 0.92567 0.75761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.95 13.65 21.44 0.29 -59.66 16 2 C -0.03 -2.04 5.46 84.65 0.46 -1.58 16 3 Si 1.13 49.29 29.90 68.60 2.05 51.34 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.63 -36.43 9.28 25.60 0.24 -36.19 16 8 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 9 C 0.26 15.07 4.74 85.63 0.41 15.48 16 10 N -0.70 -32.87 5.55 -466.78 -2.59 -35.46 16 11 C 0.52 22.92 5.57 87.66 0.49 23.41 16 12 O -0.61 -32.88 15.74 -3.01 -0.05 -32.93 16 13 C -0.11 -3.19 3.29 -10.81 -0.04 -3.23 16 14 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 15 C -0.12 -3.02 6.32 31.70 0.20 -2.82 16 16 C -0.11 -1.89 6.91 31.91 0.22 -1.67 16 17 C -0.15 -2.85 6.56 31.67 0.21 -2.64 16 18 C 0.11 2.58 4.23 31.32 0.13 2.71 16 19 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 20 O -0.59 -18.53 11.77 -148.98 -1.75 -20.29 16 21 H 0.25 16.96 7.22 -92.70 -0.67 16.29 16 22 H -0.02 -1.65 8.01 -2.39 -0.02 -1.67 16 23 H -0.02 -1.38 8.01 -2.39 -0.02 -1.40 16 24 H 0.41 16.01 8.32 -92.71 -0.77 15.24 16 25 H 0.05 1.67 6.89 -2.39 -0.02 1.65 16 26 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 31 H 0.39 8.15 9.11 -74.06 -0.67 7.48 16 Total: -1.00 -81.96 262.38 0.06 -81.90 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.21 Total: 21.63 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 2.32 Total: -6.53 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -2.30 Total: -95.12 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -1.80 Total: -53.22 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.05 Total: 51.34 kcal Total: -81.96 0.06 -81.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306162451.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.943 kcal (2) G-P(sol) polarization free energy of solvation -81.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds