Wall clock time and date at job start Mon Mar 30 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.86931 * 2 1 4 4 O 1.43746 * 109.87645 * 238.83862 * 2 1 3 5 5 C 1.44478 * 106.98554 * 267.08927 * 4 2 1 6 6 C 1.54998 * 103.44508 * 319.94809 * 5 4 2 7 7 C 1.54100 * 109.87705 * 121.00612 * 2 1 3 8 8 H 1.08998 * 110.49031 * 236.06905 * 7 2 1 9 9 N 1.46495 * 110.49152 * 358.72124 * 7 2 1 10 10 C 1.34777 * 120.00359 * 201.22074 * 9 7 2 11 11 O 1.21692 * 119.99683 * 359.97438 * 10 9 7 12 12 C 1.46372 * 120.00143 * 179.97438 * 10 9 7 13 13 H 1.07996 * 120.00327 * 359.97438 * 12 10 9 14 14 C 1.40053 * 119.99900 * 180.02562 * 12 10 9 15 15 N 1.30668 * 119.99669 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99799 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47214 * 60.00126 * 16 14 12 18 18 H 1.48505 * 109.46891 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47237 * 299.99876 * 16 14 12 20 20 H 1.09002 * 109.46966 * 298.99127 * 1 2 3 21 21 H 1.08999 * 109.47103 * 58.99360 * 1 2 3 22 22 H 1.08999 * 109.46741 * 178.99403 * 1 2 3 23 23 H 1.08999 * 109.47436 * 181.00465 * 3 2 1 24 24 H 1.09005 * 109.47578 * 301.00341 * 3 2 1 25 25 H 1.09000 * 109.47518 * 61.00643 * 3 2 1 26 26 H 1.08997 * 110.65764 * 201.45460 * 5 4 2 27 27 H 1.08997 * 110.61802 * 78.42806 * 5 4 2 28 28 H 1.09002 * 110.90913 * 278.80261 * 6 5 4 29 29 H 1.08997 * 110.90321 * 155.23378 * 6 5 4 30 30 H 0.97005 * 119.99962 * 21.21930 * 9 7 2 31 31 H 0.97005 * 119.99941 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0500 1.4388 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 2.2283 -2.0734 -0.7619 6 6 2.8325 -1.9516 0.6602 7 6 2.0540 -0.7465 1.2421 8 1 2.7197 -0.1054 1.8200 9 7 0.9382 -1.2090 2.0711 10 6 1.1383 -1.4924 3.3734 11 8 2.2461 -1.3646 3.8606 12 6 0.0233 -1.9540 4.2017 13 1 -0.9599 -2.0670 3.7695 14 6 0.2312 -2.2479 5.5552 15 7 1.4207 -2.1107 6.0783 16 14 -1.1916 -2.8376 6.6121 17 1 -1.7356 -4.1000 6.0503 18 1 -0.7128 -3.0787 7.9970 19 1 -2.2573 -1.8036 6.6292 20 1 -0.3633 0.4981 0.8989 21 1 -0.3633 0.5294 -0.8808 22 1 -0.3633 -1.0275 -0.0180 23 1 3.1399 1.4314 -0.0180 24 1 1.6757 1.9606 -0.8809 25 1 1.7051 1.9499 0.8988 26 1 2.9298 -2.5646 -1.4362 27 1 1.2816 -2.6127 -0.7319 28 1 3.9004 -1.7383 0.6122 29 1 2.6437 -2.8540 1.2416 30 1 0.0552 -1.3112 1.6826 31 1 1.5649 -2.3146 7.0156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306164357.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:12 Heat of formation + Delta-G solvation = -87.216190 kcal Electronic energy + Delta-G solvation = -14830.105708 eV Core-core repulsion = 12304.459048 eV Total energy + Delta-G solvation = -2525.646660 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84654 -36.85577 -33.61377 -32.51237 -31.92923 -29.93051 -27.25368 -26.44345 -24.70090 -21.54833 -20.03609 -19.03776 -17.43310 -16.00956 -15.61892 -15.29369 -14.63847 -14.03360 -13.89874 -13.10317 -13.03429 -12.54707 -12.24071 -12.08506 -11.91220 -11.60193 -11.32166 -11.15059 -10.98665 -10.70557 -10.57234 -10.46999 -10.27623 -10.15598 -9.39881 -8.86736 -7.64166 -7.53126 -6.20495 -4.66670 3.14083 3.19180 3.20881 4.06451 4.11668 4.54828 4.76583 5.00475 5.12308 5.29664 5.40315 5.45193 5.61464 5.78439 5.84932 5.87587 5.98931 6.05473 6.17301 6.23278 6.36985 6.42759 6.51475 6.67731 7.19169 7.40971 7.89488 8.08192 8.30215 9.00202 9.50334 10.57936 10.76478 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049646 B = 0.008129 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.859980 B = 3443.639273 C = 3541.878013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 C -0.138 4.138 4 O -0.374 6.374 5 C 0.047 3.953 6 C -0.165 4.165 7 C 0.136 3.864 8 H 0.089 0.911 9 N -0.760 5.760 10 C 0.554 3.446 11 O -0.579 6.579 12 C -0.546 4.546 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.268 1.268 20 H 0.075 0.925 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.383 0.617 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 2.045 -9.959 10.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 C -0.196 4.196 4 O -0.294 6.294 5 C -0.029 4.029 6 C -0.204 4.204 7 C 0.028 3.972 8 H 0.107 0.893 9 N -0.418 5.418 10 C 0.358 3.642 11 O -0.462 6.462 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.193 1.193 20 H 0.094 0.906 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.218 0.782 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.960 2.226 -9.622 9.922 hybrid contribution -1.157 -0.557 0.528 1.388 sum -2.117 1.669 -9.094 9.485 Atomic orbital electron populations 1.22186 0.95160 1.02303 1.02443 1.22344 0.93866 0.93254 0.85563 1.21839 1.01625 0.93917 1.02181 1.88850 1.86208 1.20925 1.33369 1.23533 0.99559 0.83974 0.95849 1.23539 1.00105 1.00943 0.95822 1.21773 0.90454 0.94165 0.90774 0.89271 1.46461 1.09953 1.74139 1.11200 1.18236 0.89626 0.77339 0.79002 1.90600 1.26173 1.57207 1.72227 1.20841 0.95279 1.47833 0.94377 0.91560 1.25698 0.95957 0.93423 0.98116 1.70008 1.21465 1.35201 1.12914 0.86444 0.81742 0.79767 0.78850 1.19316 1.20548 1.19283 0.90640 0.92313 0.92133 0.91969 0.92249 0.91089 0.89600 0.92505 0.90931 0.89732 0.78214 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 7.46 37.16 0.28 -2.11 16 2 C 0.09 1.44 1.19 -90.05 -0.11 1.34 16 3 C -0.14 -1.97 8.67 37.15 0.32 -1.65 16 4 O -0.37 -6.09 10.86 -35.23 -0.38 -6.47 16 5 C 0.05 0.71 7.67 38.21 0.29 1.01 16 6 C -0.16 -2.95 6.87 -24.72 -0.17 -3.12 16 7 C 0.14 2.65 2.95 -66.40 -0.20 2.45 16 8 H 0.09 1.94 7.23 -51.93 -0.38 1.57 16 9 N -0.76 -16.73 4.61 -53.73 -0.25 -16.98 16 10 C 0.55 15.51 7.74 -12.99 -0.10 15.41 16 11 O -0.58 -18.48 14.73 5.20 0.08 -18.41 16 12 C -0.55 -15.27 9.54 -35.63 -0.34 -15.61 16 13 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 14 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 15 N -0.77 -22.86 11.83 55.55 0.66 -22.21 16 16 Si 0.91 20.01 29.56 -169.99 -5.02 14.98 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 20 H 0.07 1.13 7.63 -51.93 -0.40 0.73 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.88 7.04 -51.93 -0.37 0.51 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.68 8.06 -51.93 -0.42 1.26 16 30 H 0.38 7.53 5.69 -40.82 -0.23 7.30 16 31 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 259.26 15.07 3.91 3.91 Total: -1.00 -32.86 259.26 -5.42 -38.28 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -4.29 Total: 6.83 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.12 Total: 0.07 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.41 Total: -39.19 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.31 Total: -24.88 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.86 -5.42 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306164357.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.932 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds