Wall clock time and date at job start Mon Mar 30 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.86931 * 2 1 4 4 O 1.43746 * 109.87645 * 238.83862 * 2 1 3 5 5 C 1.44478 * 106.98554 * 267.08927 * 4 2 1 6 6 C 1.54998 * 103.44508 * 319.94809 * 5 4 2 7 7 C 1.54100 * 109.87705 * 121.00612 * 2 1 3 8 8 H 1.08998 * 110.49031 * 236.06905 * 7 2 1 9 9 N 1.46495 * 110.49152 * 358.72124 * 7 2 1 10 10 C 1.34777 * 120.00359 * 201.22074 * 9 7 2 11 11 O 1.21692 * 119.99683 * 359.97438 * 10 9 7 12 12 C 1.46372 * 120.00143 * 179.97438 * 10 9 7 13 13 H 1.07996 * 120.00327 * 359.97438 * 12 10 9 14 14 C 1.40053 * 119.99900 * 180.02562 * 12 10 9 15 15 N 1.30668 * 119.99669 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99799 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47214 * 60.00126 * 16 14 12 18 18 H 1.48505 * 109.46891 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47237 * 299.99876 * 16 14 12 20 20 H 1.09002 * 109.46966 * 298.99127 * 1 2 3 21 21 H 1.08999 * 109.47103 * 58.99360 * 1 2 3 22 22 H 1.08999 * 109.46741 * 178.99403 * 1 2 3 23 23 H 1.08999 * 109.47436 * 181.00465 * 3 2 1 24 24 H 1.09005 * 109.47578 * 301.00341 * 3 2 1 25 25 H 1.09000 * 109.47518 * 61.00643 * 3 2 1 26 26 H 1.08997 * 110.65764 * 201.45460 * 5 4 2 27 27 H 1.08997 * 110.61802 * 78.42806 * 5 4 2 28 28 H 1.09002 * 110.90913 * 278.80261 * 6 5 4 29 29 H 1.08997 * 110.90321 * 155.23378 * 6 5 4 30 30 H 0.97005 * 119.99962 * 21.21930 * 9 7 2 31 31 H 0.97005 * 119.99941 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0500 1.4388 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 2.2283 -2.0734 -0.7619 6 6 2.8325 -1.9516 0.6602 7 6 2.0540 -0.7465 1.2421 8 1 2.7197 -0.1054 1.8200 9 7 0.9382 -1.2090 2.0711 10 6 1.1383 -1.4924 3.3734 11 8 2.2461 -1.3646 3.8606 12 6 0.0233 -1.9540 4.2017 13 1 -0.9599 -2.0670 3.7695 14 6 0.2312 -2.2479 5.5552 15 7 1.4207 -2.1107 6.0783 16 14 -1.1916 -2.8376 6.6121 17 1 -1.7356 -4.1000 6.0503 18 1 -0.7128 -3.0787 7.9970 19 1 -2.2573 -1.8036 6.6292 20 1 -0.3633 0.4981 0.8989 21 1 -0.3633 0.5294 -0.8808 22 1 -0.3633 -1.0275 -0.0180 23 1 3.1399 1.4314 -0.0180 24 1 1.6757 1.9606 -0.8809 25 1 1.7051 1.9499 0.8988 26 1 2.9298 -2.5646 -1.4362 27 1 1.2816 -2.6127 -0.7319 28 1 3.9004 -1.7383 0.6122 29 1 2.6437 -2.8540 1.2416 30 1 0.0552 -1.3112 1.6826 31 1 1.5649 -2.3146 7.0156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306164357.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:11 Heat of formation + Delta-G solvation = -111.402303 kcal Electronic energy + Delta-G solvation = -14831.154497 eV Core-core repulsion = 12304.459048 eV Total energy + Delta-G solvation = -2526.695449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.28653 -38.86236 -35.32253 -34.51760 -33.41440 -31.58167 -28.53903 -28.35703 -26.19193 -23.11317 -21.70083 -20.67161 -19.34108 -17.56381 -17.47810 -16.86136 -16.07400 -15.74446 -15.46271 -14.78804 -14.51811 -14.26743 -13.87952 -13.41279 -13.26270 -13.05720 -12.93108 -12.72692 -12.58257 -12.52617 -12.13572 -12.07904 -11.96762 -11.59595 -10.92172 -10.66130 -9.86087 -9.46917 -8.29249 -6.86170 1.39884 1.43036 1.54706 2.23920 2.46620 2.79484 3.07720 3.50313 3.73894 3.80264 3.97753 4.08306 4.18776 4.31620 4.60687 4.71633 4.74045 4.85591 4.87079 4.91967 5.01199 5.09015 5.22451 5.30290 5.31314 5.85678 5.88360 6.22176 6.29953 6.86431 7.53074 8.49309 8.67244 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049646 B = 0.008129 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.859980 B = 3443.639273 C = 3541.878013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 C -0.137 4.137 4 O -0.375 6.375 5 C 0.056 3.944 6 C -0.166 4.166 7 C 0.126 3.874 8 H 0.058 0.942 9 N -0.744 5.744 10 C 0.539 3.461 11 O -0.630 6.630 12 C -0.574 4.574 13 H 0.087 0.913 14 C 0.029 3.971 15 N -0.821 5.821 16 Si 0.996 3.004 17 H -0.255 1.255 18 H -0.275 1.275 19 H -0.254 1.254 20 H 0.068 0.932 21 H 0.082 0.918 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.396 0.604 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 1.849 -11.137 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 C -0.195 4.195 4 O -0.294 6.294 5 C -0.020 4.020 6 C -0.205 4.205 7 C 0.019 3.981 8 H 0.076 0.924 9 N -0.401 5.401 10 C 0.343 3.657 11 O -0.517 6.517 12 C -0.611 4.611 13 H 0.105 0.895 14 C -0.186 4.186 15 N -0.450 5.450 16 Si 0.816 3.184 17 H -0.179 1.179 18 H -0.200 1.200 19 H -0.178 1.178 20 H 0.087 0.913 21 H 0.101 0.899 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.134 0.866 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.234 0.766 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.863 2.040 -10.867 11.422 hybrid contribution -0.515 -0.476 0.832 1.088 sum -3.377 1.564 -10.036 10.704 Atomic orbital electron populations 1.22161 0.93716 1.02703 1.03309 1.22322 0.94944 0.93592 0.83634 1.21848 1.01656 0.92851 1.03123 1.88852 1.86284 1.21347 1.32920 1.23593 1.00455 0.83796 0.94168 1.23482 1.00528 0.98961 0.97554 1.21934 0.89592 0.94973 0.91609 0.92396 1.46092 1.11339 1.72868 1.09832 1.18594 0.89126 0.77146 0.80790 1.90555 1.27922 1.59387 1.73837 1.21391 0.96122 1.48174 0.95376 0.89528 1.26953 0.99247 0.92811 0.99581 1.70181 1.24603 1.36552 1.13690 0.85094 0.77301 0.79696 0.76358 1.17881 1.19990 1.17785 0.91274 0.89878 0.92021 0.92104 0.89894 0.91447 0.86627 0.91685 0.90452 0.92269 0.76645 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 7.46 71.98 0.54 -3.81 16 2 C 0.09 2.92 1.19 -10.42 -0.01 2.91 16 3 C -0.14 -3.71 8.67 71.98 0.62 -3.09 16 4 O -0.37 -11.22 10.86 -148.98 -1.62 -12.84 16 5 C 0.06 1.57 7.67 72.67 0.56 2.13 16 6 C -0.17 -5.96 6.87 31.90 0.22 -5.74 16 7 C 0.13 4.96 2.95 45.98 0.14 5.10 16 8 H 0.06 2.64 7.23 -2.39 -0.02 2.63 16 9 N -0.74 -33.17 4.61 -442.13 -2.04 -35.21 16 10 C 0.54 31.06 7.74 86.36 0.67 31.73 16 11 O -0.63 -42.05 14.73 -4.32 -0.06 -42.11 16 12 C -0.57 -32.30 9.54 24.83 0.24 -32.06 16 13 H 0.09 4.35 7.85 -2.91 -0.02 4.32 16 14 C 0.03 1.63 5.50 85.31 0.47 2.10 16 15 N -0.82 -50.20 11.83 21.84 0.26 -49.95 16 16 Si 1.00 40.66 29.56 68.60 2.03 42.69 16 17 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 19 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 20 H 0.07 1.95 7.63 -2.39 -0.02 1.93 16 21 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.06 1.63 7.04 -2.39 -0.02 1.62 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.08 1.85 8.14 -2.38 -0.02 1.84 16 25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 28 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.06 2.41 8.06 -2.39 -0.02 2.40 16 30 H 0.40 15.37 5.69 -92.70 -0.53 14.84 16 31 H 0.27 15.23 8.29 -92.70 -0.77 14.46 16 Total: -1.00 -72.76 259.26 2.59 -70.16 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.59 Total: 28.00 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 3.44 Total: -0.74 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.78 Total: -85.15 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -1.68 Total: -54.96 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -72.76 2.59 -70.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306164357.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.241 kcal (2) G-P(sol) polarization free energy of solvation -72.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds