Wall clock time and date at job start Mon Mar 30 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47010 * 269.99774 * 3 2 1 5 5 H 1.48496 * 109.46876 * 29.99530 * 3 2 1 6 6 H 1.48491 * 109.47145 * 149.99929 * 3 2 1 7 7 C 1.38807 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99970 * 164.19488 * 7 2 1 9 9 N 1.36946 * 120.00208 * 344.20502 * 7 2 1 10 10 C 1.47163 * 121.08297 * 153.74171 * 9 7 2 11 11 C 1.53276 * 108.57586 * 128.74586 * 10 9 7 12 12 O 1.43140 * 109.22282 * 53.03045 * 11 10 9 13 13 C 1.41804 * 114.38158 * 299.21494 * 12 11 10 14 14 C 1.54448 * 110.83092 * 183.41084 * 13 12 11 15 15 C 1.54532 * 102.16967 * 84.94083 * 14 13 12 16 16 O 1.43316 * 107.60951 * 20.64146 * 15 14 13 17 17 C 1.43807 * 110.01230 * 1.61038 * 16 15 14 18 18 C 1.47344 * 121.08032 * 333.76081 * 9 7 2 19 19 H 0.97003 * 119.99684 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.61625 * 248.47251 * 10 9 7 21 21 H 1.08996 * 109.62189 * 8.83450 * 10 9 7 22 22 H 1.09000 * 109.51463 * 172.95715 * 11 10 9 23 23 H 1.09005 * 109.51386 * 293.05957 * 11 10 9 24 24 H 1.09009 * 110.86169 * 326.77614 * 14 13 12 25 25 H 1.08999 * 111.04645 * 203.19518 * 14 13 12 26 26 H 1.08994 * 109.83119 * 261.12601 * 15 14 13 27 27 H 1.08998 * 109.83067 * 140.15871 * 15 14 13 28 28 H 1.08997 * 110.32337 * 95.36616 * 17 16 15 29 29 H 1.08996 * 110.31970 * 217.56590 * 17 16 15 30 30 H 1.09009 * 109.67874 * 109.35836 * 18 9 7 31 31 H 1.08999 * 109.71533 * 348.83284 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0596 -1.2200 -0.2542 9 7 1.3643 -2.3656 0.3239 10 6 1.8348 -3.6631 -0.1868 11 6 1.9804 -4.6290 0.9943 12 8 0.7538 -4.6604 1.7314 13 6 0.3676 -3.4105 2.2788 14 6 -0.9163 -3.5547 3.1251 15 6 -0.3548 -3.9918 4.4969 16 8 1.0255 -3.6087 4.5424 17 6 1.3877 -2.9282 3.3284 18 6 0.1753 -2.3589 1.1941 19 1 -0.4850 0.8401 0.0004 20 1 1.1107 -4.0609 -0.8979 21 1 2.7988 -3.5348 -0.6792 22 1 2.2070 -5.6280 0.6219 23 1 2.7877 -4.2908 1.6439 24 1 -1.5701 -4.3222 2.7109 25 1 -1.4408 -2.6026 3.2059 26 1 -0.4421 -5.0729 4.6047 27 1 -0.9031 -3.4938 5.2965 28 1 1.3116 -1.8492 3.4622 29 1 2.3987 -3.2028 3.0277 30 1 -0.7114 -2.5961 0.6060 31 1 0.0600 -1.3764 1.6517 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306181175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:08 Heat of formation + Delta-G solvation = -61.130008 kcal Electronic energy + Delta-G solvation = -15381.053556 eV Core-core repulsion = 12856.538078 eV Total energy + Delta-G solvation = -2524.515478 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82762 -37.00376 -34.47982 -31.94801 -31.25757 -29.11127 -27.55592 -25.45325 -23.29761 -22.33340 -21.07056 -18.93602 -17.11320 -16.37647 -15.85147 -14.93135 -14.66450 -14.39075 -14.13586 -13.54998 -13.35188 -13.05528 -12.65619 -12.38846 -11.46096 -11.14939 -11.09142 -11.01084 -10.83842 -10.73694 -10.38592 -10.31133 -9.96611 -9.52546 -9.16041 -8.91445 -8.55365 -6.77418 -5.87694 -3.31109 3.32273 3.39661 3.41701 4.24161 4.32568 4.42179 4.99764 5.24384 5.34297 5.40880 5.41842 5.63875 5.82713 5.88116 5.95500 6.06847 6.10426 6.28793 6.29190 6.34305 6.50672 6.62914 6.76982 7.03389 7.36955 7.42554 7.68468 7.93957 8.29092 9.07481 9.70392 10.28072 11.20855 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036078 B = 0.011544 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.902148 B = 2424.823578 C = 2729.707053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.109 3.891 11 C 0.044 3.956 12 O -0.374 6.374 13 C 0.064 3.936 14 C -0.140 4.140 15 C 0.057 3.943 16 O -0.392 6.392 17 C 0.040 3.960 18 C 0.163 3.837 19 H 0.255 0.745 20 H 0.026 0.974 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 -6.199 4.951 7.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.320 5.320 10 C -0.018 4.018 11 C -0.034 4.034 12 O -0.293 6.293 13 C 0.023 3.977 14 C -0.178 4.178 15 C -0.020 4.020 16 O -0.312 6.312 17 C -0.037 4.037 18 C 0.037 3.963 19 H 0.065 0.935 20 H 0.044 0.956 21 H 0.082 0.918 22 H 0.102 0.898 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.049 0.951 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.056 -6.237 5.126 8.073 hybrid contribution 0.381 1.141 -0.370 1.259 sum 0.325 -5.096 4.756 6.978 Atomic orbital electron populations 1.70010 1.05264 1.25699 1.53989 1.25053 0.95374 0.98456 1.00748 0.86268 0.79161 0.83406 0.77816 1.21292 1.21434 1.20367 1.19188 0.92283 0.84264 1.42516 0.91308 1.44141 1.32243 1.01476 1.54156 1.21601 0.98694 0.87581 0.93880 1.23110 0.86365 0.99808 0.94068 1.87612 1.41032 1.30272 1.70344 1.23128 0.92908 0.86849 0.94819 1.22975 0.97390 1.03140 0.94297 1.23068 0.82803 0.99367 0.96765 1.88353 1.26080 1.77294 1.39463 1.23806 0.99776 0.96888 0.83187 1.21147 0.89280 0.96617 0.89284 0.93456 0.95564 0.91817 0.89797 0.93444 0.89571 0.89135 0.91793 0.92079 0.91125 0.89633 0.95127 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.71 11.11 55.49 0.62 -25.09 16 2 C 0.00 0.06 4.98 -17.43 -0.09 -0.03 16 3 Si 0.90 21.30 29.58 -169.99 -5.03 16.27 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.25 -6.82 9.66 -15.06 -0.15 -6.96 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -14.87 3.00 -172.28 -0.52 -15.38 16 10 C 0.11 2.30 6.71 -3.54 -0.02 2.27 16 11 C 0.04 0.82 6.79 37.30 0.25 1.07 16 12 O -0.37 -7.57 10.28 -35.22 -0.36 -7.94 16 13 C 0.06 1.30 0.85 -89.64 -0.08 1.22 16 14 C -0.14 -2.36 6.20 -25.17 -0.16 -2.51 16 15 C 0.06 0.90 7.81 37.96 0.30 1.20 16 16 O -0.39 -7.49 11.37 -35.23 -0.40 -7.89 16 17 C 0.04 0.79 6.76 37.74 0.26 1.04 16 18 C 0.16 3.87 4.06 -3.94 -0.02 3.85 16 19 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 20 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 22 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 23 H 0.05 0.88 6.29 -51.93 -0.33 0.55 16 24 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 25 H 0.09 1.45 7.99 -51.93 -0.42 1.04 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.45 7.80 -51.93 -0.41 1.05 16 29 H 0.09 1.73 6.13 -51.93 -0.32 1.41 16 30 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.10 2.51 5.94 -51.93 -0.31 2.20 16 LS Contribution 247.62 15.07 3.73 3.73 Total: -1.00 -29.63 247.62 -5.93 -35.56 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.27 Total: -0.41 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 0.30 Total: 1.16 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.10 Total: -40.48 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.76 Total: -15.83 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.63 -5.93 -35.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306181175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.571 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds