Wall clock time and date at job start Mon Mar 30 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47010 * 269.99774 * 3 2 1 5 5 H 1.48496 * 109.46876 * 29.99530 * 3 2 1 6 6 H 1.48491 * 109.47145 * 149.99929 * 3 2 1 7 7 C 1.38807 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99970 * 164.19488 * 7 2 1 9 9 N 1.36946 * 120.00208 * 344.20502 * 7 2 1 10 10 C 1.47163 * 121.08297 * 153.74171 * 9 7 2 11 11 C 1.53276 * 108.57586 * 128.74586 * 10 9 7 12 12 O 1.43140 * 109.22282 * 53.03045 * 11 10 9 13 13 C 1.41804 * 114.38158 * 299.21494 * 12 11 10 14 14 C 1.54448 * 110.83092 * 183.41084 * 13 12 11 15 15 C 1.54532 * 102.16967 * 84.94083 * 14 13 12 16 16 O 1.43316 * 107.60951 * 20.64146 * 15 14 13 17 17 C 1.43807 * 110.01230 * 1.61038 * 16 15 14 18 18 C 1.47344 * 121.08032 * 333.76081 * 9 7 2 19 19 H 0.97003 * 119.99684 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.61625 * 248.47251 * 10 9 7 21 21 H 1.08996 * 109.62189 * 8.83450 * 10 9 7 22 22 H 1.09000 * 109.51463 * 172.95715 * 11 10 9 23 23 H 1.09005 * 109.51386 * 293.05957 * 11 10 9 24 24 H 1.09009 * 110.86169 * 326.77614 * 14 13 12 25 25 H 1.08999 * 111.04645 * 203.19518 * 14 13 12 26 26 H 1.08994 * 109.83119 * 261.12601 * 15 14 13 27 27 H 1.08998 * 109.83067 * 140.15871 * 15 14 13 28 28 H 1.08997 * 110.32337 * 95.36616 * 17 16 15 29 29 H 1.08996 * 110.31970 * 217.56590 * 17 16 15 30 30 H 1.09009 * 109.67874 * 109.35836 * 18 9 7 31 31 H 1.08999 * 109.71533 * 348.83284 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0596 -1.2200 -0.2542 9 7 1.3643 -2.3656 0.3239 10 6 1.8348 -3.6631 -0.1868 11 6 1.9804 -4.6290 0.9943 12 8 0.7538 -4.6604 1.7314 13 6 0.3676 -3.4105 2.2788 14 6 -0.9163 -3.5547 3.1251 15 6 -0.3548 -3.9918 4.4969 16 8 1.0255 -3.6087 4.5424 17 6 1.3877 -2.9282 3.3284 18 6 0.1753 -2.3589 1.1941 19 1 -0.4850 0.8401 0.0004 20 1 1.1107 -4.0609 -0.8979 21 1 2.7988 -3.5348 -0.6792 22 1 2.2070 -5.6280 0.6219 23 1 2.7877 -4.2908 1.6439 24 1 -1.5701 -4.3222 2.7109 25 1 -1.4408 -2.6026 3.2059 26 1 -0.4421 -5.0729 4.6047 27 1 -0.9031 -3.4938 5.2965 28 1 1.3116 -1.8492 3.4622 29 1 2.3987 -3.2028 3.0277 30 1 -0.7114 -2.5961 0.6060 31 1 0.0600 -1.3764 1.6517 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306181175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:08 Heat of formation + Delta-G solvation = -81.705643 kcal Electronic energy + Delta-G solvation = -15381.945782 eV Core-core repulsion = 12856.538078 eV Total energy + Delta-G solvation = -2525.407705 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38873 -38.56298 -36.33086 -33.52303 -33.19224 -30.56658 -29.29228 -27.31040 -25.06074 -23.90195 -22.60947 -20.60895 -18.97911 -17.97127 -17.50487 -16.56356 -16.24645 -16.13452 -15.68079 -15.25331 -15.12764 -14.68082 -14.44021 -13.88300 -13.17086 -12.94739 -12.73073 -12.55622 -12.50397 -12.35706 -12.17783 -12.09791 -11.82563 -11.16708 -10.82795 -10.57467 -10.37346 -8.75731 -7.92761 -5.39543 1.45149 1.47210 1.56472 2.45766 2.74216 2.88864 3.23567 3.40141 3.70128 3.86576 4.02866 4.24324 4.29084 4.31328 4.51204 4.57252 4.70337 4.73769 4.81468 4.90990 5.00901 5.02405 5.11947 5.19901 5.46528 5.58651 5.95511 6.26838 6.35888 7.04077 7.71930 8.26861 9.13877 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036078 B = 0.011544 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.902148 B = 2424.823578 C = 2729.707053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.073 0.927 9 N -0.615 5.615 10 C 0.104 3.896 11 C 0.049 3.951 12 O -0.378 6.378 13 C 0.066 3.934 14 C -0.137 4.137 15 C 0.055 3.945 16 O -0.403 6.403 17 C 0.048 3.952 18 C 0.174 3.826 19 H 0.252 0.748 20 H 0.019 0.981 21 H 0.074 0.926 22 H 0.122 0.878 23 H 0.050 0.950 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.002 0.998 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -7.060 5.745 9.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.394 4.394 8 H 0.090 0.910 9 N -0.340 5.340 10 C -0.022 4.022 11 C -0.028 4.028 12 O -0.297 6.297 13 C 0.024 3.976 14 C -0.175 4.175 15 C -0.021 4.021 16 O -0.323 6.323 17 C -0.028 4.028 18 C 0.048 3.952 19 H 0.061 0.939 20 H 0.037 0.963 21 H 0.093 0.907 22 H 0.140 0.860 23 H 0.068 0.932 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.020 0.980 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.518 -7.129 5.924 9.283 hybrid contribution 0.202 1.353 -0.661 1.520 sum 0.720 -5.776 5.263 7.847 Atomic orbital electron populations 1.70159 1.06624 1.26076 1.55348 1.25792 0.96107 1.01448 1.01001 0.85278 0.78145 0.79437 0.77637 1.21114 1.21741 1.19403 1.19522 0.92668 0.85336 1.41829 0.90971 1.44420 1.32320 1.02386 1.54825 1.21784 0.98792 0.86527 0.95059 1.23193 0.85844 1.01057 0.92750 1.87615 1.41786 1.29866 1.70410 1.22986 0.94895 0.85873 0.93800 1.23014 0.96139 1.03956 0.94360 1.23291 0.81327 1.00779 0.96727 1.88337 1.28003 1.77223 1.38705 1.23578 0.99463 0.96181 0.83613 1.20889 0.88072 0.96541 0.89682 0.93871 0.96275 0.90742 0.85974 0.93201 0.88191 0.88865 0.90045 0.89410 0.92511 0.90087 0.97976 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.33 11.11 21.65 0.24 -54.09 16 2 C -0.05 -2.63 4.98 84.86 0.42 -2.21 16 3 Si 0.97 44.02 29.58 68.60 2.03 46.05 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.26 -14.26 9.66 84.03 0.81 -13.45 16 8 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 9 N -0.61 -30.83 3.00 -698.96 -2.09 -32.92 16 10 C 0.10 4.29 6.71 86.35 0.58 4.87 16 11 C 0.05 1.70 6.79 72.07 0.49 2.19 16 12 O -0.38 -14.59 10.28 -148.93 -1.53 -16.12 16 13 C 0.07 2.61 0.85 -10.16 -0.01 2.60 16 14 C -0.14 -4.38 6.20 31.61 0.20 -4.18 16 15 C 0.05 1.58 7.81 72.50 0.57 2.15 16 16 O -0.40 -14.55 11.37 -148.98 -1.69 -16.25 16 17 C 0.05 1.88 6.76 72.36 0.49 2.37 16 18 C 0.17 8.42 4.06 85.98 0.35 8.77 16 19 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 20 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 21 H 0.07 2.86 7.96 -2.39 -0.02 2.84 16 22 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 23 H 0.05 1.73 6.29 -2.38 -0.01 1.72 16 24 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 25 H 0.09 2.91 7.99 -2.39 -0.02 2.89 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 2.35 7.80 -2.39 -0.02 2.33 16 29 H 0.08 3.20 6.13 -2.39 -0.01 3.19 16 30 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 31 H 0.07 3.76 5.94 -2.39 -0.01 3.75 16 Total: -1.00 -62.76 247.62 1.96 -60.80 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.11 Total: 9.42 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 3.90 Total: 3.10 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -1.85 Total: -87.01 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -3.22 Total: -32.37 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -62.76 1.96 -60.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306181175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.901 kcal (2) G-P(sol) polarization free energy of solvation -62.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds