Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86804 * 119.99893 * 2 1 4 4 H 1.48500 * 109.46925 * 274.98123 * 3 2 1 5 5 H 1.48495 * 109.47144 * 34.98071 * 3 2 1 6 6 H 1.48503 * 109.46912 * 154.98072 * 3 2 1 7 7 C 1.40051 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00167 * 186.15023 * 7 2 1 9 9 C 1.46371 * 119.99715 * 6.15756 * 7 2 1 10 10 O 1.21696 * 120.00105 * 353.93427 * 9 7 2 11 11 N 1.34774 * 120.00242 * 173.93931 * 9 7 2 12 12 C 1.46501 * 120.00255 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46848 * 324.99417 * 12 11 9 14 14 C 1.53001 * 109.47198 * 84.99742 * 12 11 9 15 15 C 1.52992 * 109.47060 * 60.00034 * 14 12 11 16 16 C 1.53007 * 109.47367 * 60.00183 * 15 14 12 17 17 C 1.53004 * 109.46704 * 299.99602 * 16 15 14 18 18 H 1.09001 * 109.47189 * 300.00336 * 17 16 15 19 19 O 1.42894 * 109.46677 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.46895 * 204.99702 * 12 11 9 21 21 H 0.97002 * 119.99645 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00054 * 359.97438 * 11 9 7 23 23 H 1.09001 * 109.46835 * 180.02562 * 14 12 11 24 24 H 1.09000 * 109.46985 * 299.99549 * 14 12 11 25 25 H 1.09006 * 109.47106 * 180.02562 * 15 14 12 26 26 H 1.09001 * 109.47472 * 299.99825 * 15 14 12 27 27 H 1.08991 * 109.47115 * 59.99426 * 16 15 14 28 28 H 1.09004 * 109.46930 * 180.02562 * 16 15 14 29 29 H 0.96704 * 114.00312 * 60.00865 * 19 17 16 30 30 H 1.09006 * 109.47212 * 60.00106 * 20 12 11 31 31 H 1.09001 * 109.47328 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2155 0.1007 9 6 1.2815 -2.4769 -0.1349 10 8 0.0646 -2.4828 -0.1369 11 7 1.9612 -3.6342 -0.2572 12 6 1.2350 -4.8994 -0.3922 13 1 0.3234 -4.8605 0.2041 14 6 0.8741 -5.1261 -1.8616 15 6 2.1537 -5.1808 -2.6984 16 6 3.0360 -6.3302 -2.2068 17 6 3.3969 -6.1034 -0.7374 18 1 3.9372 -5.1620 -0.6370 19 8 4.2204 -7.1771 -0.2781 20 6 2.1172 -6.0487 0.0995 21 1 -0.4850 0.8401 -0.0004 22 1 2.9312 -3.6295 -0.2559 23 1 0.3335 -6.0673 -1.9619 24 1 0.2456 -4.3074 -2.2119 25 1 1.8966 -5.3418 -3.7454 26 1 2.6941 -4.2395 -2.5981 27 1 2.4957 -7.2714 -2.3072 28 1 3.9479 -6.3688 -2.8028 29 1 5.0508 -7.2718 -0.7644 30 1 2.3743 -5.8872 1.1464 31 1 1.5768 -6.9900 -0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306200336.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = -110.801413 kcal Electronic energy + Delta-G solvation = -14687.246532 eV Core-core repulsion = 12160.577140 eV Total energy + Delta-G solvation = -2526.669392 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.22890 -36.89314 -35.18857 -32.61774 -31.88888 -29.61118 -28.78161 -26.01015 -22.27480 -22.00424 -20.50875 -18.26362 -17.74311 -16.64336 -15.51317 -15.21186 -14.48989 -14.32904 -13.97715 -13.81679 -12.81924 -12.54308 -12.32698 -11.90841 -11.76631 -11.66329 -11.22790 -11.03695 -10.98260 -10.49322 -10.44578 -10.30093 -10.14680 -9.80793 -9.57103 -8.83748 -7.58984 -7.46973 -6.18165 -4.62373 3.13857 3.21223 3.24637 4.11240 4.29527 4.60070 4.83992 4.94141 5.03409 5.28828 5.47988 5.57009 5.67038 5.80062 5.81392 5.93886 6.03530 6.16325 6.22838 6.31246 6.55014 6.63799 6.71591 6.85992 7.44658 7.71392 7.95091 8.13960 8.35366 9.03999 9.56148 10.61480 10.80791 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045233 B = 0.008007 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.868007 B = 3495.994973 C = 3683.407166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.760 5.760 12 C 0.158 3.842 13 H 0.081 0.919 14 C -0.130 4.130 15 C -0.114 4.114 16 C -0.147 4.147 17 C 0.104 3.896 18 H 0.057 0.943 19 O -0.572 6.572 20 C -0.116 4.116 21 H 0.268 0.732 22 H 0.377 0.623 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.373 0.627 30 H 0.070 0.930 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.280 -9.191 -3.718 12.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.360 3.640 10 O -0.463 6.463 11 N -0.416 5.416 12 C 0.052 3.948 13 H 0.099 0.901 14 C -0.169 4.169 15 C -0.151 4.151 16 C -0.184 4.184 17 C 0.045 3.955 18 H 0.075 0.925 19 O -0.377 6.377 20 C -0.154 4.154 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.219 0.781 30 H 0.089 0.911 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.683 -9.158 -3.281 11.266 hybrid contribution 1.405 0.894 -0.506 1.740 sum 7.088 -8.264 -3.787 11.527 Atomic orbital electron populations 1.70028 1.07041 1.27174 1.35410 1.25693 0.94573 1.00231 0.92636 0.86394 0.80273 0.81659 0.78630 1.19863 1.20469 1.18923 1.20891 0.94040 0.89714 1.53805 0.91551 1.18198 0.87156 0.82454 0.76194 1.90594 1.14066 1.86371 1.55315 1.46253 1.08312 1.05617 1.81392 1.20441 0.95469 0.84027 0.94884 0.90138 1.21947 0.97100 1.01343 0.96522 1.21412 0.96741 0.98320 0.98654 1.22245 1.00043 0.99843 0.96305 1.21846 0.91770 0.88992 0.92866 0.92468 1.86511 1.34594 1.54168 1.62418 1.21764 0.94638 0.99243 0.99754 0.92174 0.79045 0.92584 0.90958 0.92515 0.91167 0.91597 0.92370 0.78115 0.91109 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.05 11.85 55.55 0.66 -22.39 16 2 C 0.09 2.47 5.49 -17.37 -0.10 2.37 16 3 Si 0.91 20.17 29.56 -169.99 -5.03 15.14 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.55 -15.42 9.53 -35.63 -0.34 -15.76 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.63 7.71 -12.99 -0.10 15.53 16 10 O -0.58 -18.59 14.71 5.19 0.08 -18.51 16 11 N -0.76 -16.69 4.23 -55.22 -0.23 -16.93 16 12 C 0.16 3.02 2.78 -67.93 -0.19 2.83 16 13 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 14 C -0.13 -2.27 5.60 -26.73 -0.15 -2.42 16 15 C -0.11 -1.70 5.76 -26.73 -0.15 -1.85 16 16 C -0.15 -1.86 5.55 -26.73 -0.15 -2.00 16 17 C 0.10 1.44 3.30 -26.73 -0.09 1.35 16 18 H 0.06 0.81 6.51 -51.93 -0.34 0.47 16 19 O -0.57 -7.40 13.32 -35.23 -0.47 -7.87 16 20 C -0.12 -1.82 5.26 -26.73 -0.14 -1.96 16 21 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 22 H 0.38 7.43 6.85 -40.82 -0.28 7.15 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.16 7.60 -51.93 -0.39 0.76 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.37 3.14 9.08 45.56 0.41 3.56 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 256.73 15.07 3.87 3.87 Total: -1.00 -33.76 256.73 -6.03 -39.79 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.50 Total: 8.81 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.41 Total: -1.92 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.43 Total: -39.32 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.39 Total: -26.38 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.76 -6.03 -39.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306200336.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.014 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds