Wall clock time and date at job start Mon Mar 30 2020 02:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86804 * 119.99893 * 2 1 4 4 H 1.48500 * 109.46925 * 274.98123 * 3 2 1 5 5 H 1.48495 * 109.47144 * 34.98071 * 3 2 1 6 6 H 1.48503 * 109.46912 * 154.98072 * 3 2 1 7 7 C 1.40051 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00167 * 186.15023 * 7 2 1 9 9 C 1.46371 * 119.99715 * 6.15756 * 7 2 1 10 10 O 1.21696 * 120.00105 * 353.93427 * 9 7 2 11 11 N 1.34774 * 120.00242 * 173.93931 * 9 7 2 12 12 C 1.46501 * 120.00255 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46848 * 324.99417 * 12 11 9 14 14 C 1.53001 * 109.47198 * 84.99742 * 12 11 9 15 15 C 1.52992 * 109.47060 * 60.00034 * 14 12 11 16 16 C 1.53007 * 109.47367 * 60.00183 * 15 14 12 17 17 C 1.53004 * 109.46704 * 299.99602 * 16 15 14 18 18 H 1.09001 * 109.47189 * 300.00336 * 17 16 15 19 19 O 1.42894 * 109.46677 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.46895 * 204.99702 * 12 11 9 21 21 H 0.97002 * 119.99645 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00054 * 359.97438 * 11 9 7 23 23 H 1.09001 * 109.46835 * 180.02562 * 14 12 11 24 24 H 1.09000 * 109.46985 * 299.99549 * 14 12 11 25 25 H 1.09006 * 109.47106 * 180.02562 * 15 14 12 26 26 H 1.09001 * 109.47472 * 299.99825 * 15 14 12 27 27 H 1.08991 * 109.47115 * 59.99426 * 16 15 14 28 28 H 1.09004 * 109.46930 * 180.02562 * 16 15 14 29 29 H 0.96704 * 114.00312 * 60.00865 * 19 17 16 30 30 H 1.09006 * 109.47212 * 60.00106 * 20 12 11 31 31 H 1.09001 * 109.47328 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2155 0.1007 9 6 1.2815 -2.4769 -0.1349 10 8 0.0646 -2.4828 -0.1369 11 7 1.9612 -3.6342 -0.2572 12 6 1.2350 -4.8994 -0.3922 13 1 0.3234 -4.8605 0.2041 14 6 0.8741 -5.1261 -1.8616 15 6 2.1537 -5.1808 -2.6984 16 6 3.0360 -6.3302 -2.2068 17 6 3.3969 -6.1034 -0.7374 18 1 3.9372 -5.1620 -0.6370 19 8 4.2204 -7.1771 -0.2781 20 6 2.1172 -6.0487 0.0995 21 1 -0.4850 0.8401 -0.0004 22 1 2.9312 -3.6295 -0.2559 23 1 0.3335 -6.0673 -1.9619 24 1 0.2456 -4.3074 -2.2119 25 1 1.8966 -5.3418 -3.7454 26 1 2.6941 -4.2395 -2.5981 27 1 2.4957 -7.2714 -2.3072 28 1 3.9479 -6.3688 -2.8028 29 1 5.0508 -7.2718 -0.7644 30 1 2.3743 -5.8872 1.1464 31 1 1.5768 -6.9900 -0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306200336.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:39 Heat of formation + Delta-G solvation = -137.701699 kcal Electronic energy + Delta-G solvation = -14688.413016 eV Core-core repulsion = 12160.577140 eV Total energy + Delta-G solvation = -2527.835876 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67798 -38.66052 -36.59209 -34.66170 -33.66349 -31.06135 -30.17691 -28.07733 -23.65166 -23.26306 -22.30506 -19.83290 -19.47126 -18.08347 -17.36962 -16.68636 -16.14731 -15.89377 -15.49886 -15.09523 -14.48530 -14.31713 -13.77775 -13.47813 -13.31217 -13.00926 -12.82485 -12.77616 -12.56701 -12.38912 -12.00491 -11.76060 -11.57642 -11.12323 -10.91974 -10.67524 -9.82564 -9.41941 -8.28950 -6.84039 1.39614 1.40704 1.56536 2.24608 2.48841 3.10419 3.27607 3.62349 3.77634 3.84556 4.11991 4.22088 4.29283 4.44699 4.55792 4.66212 4.74847 4.89718 5.05286 5.11274 5.18453 5.27284 5.32610 5.40457 5.45981 5.89851 6.25500 6.33299 6.87970 6.93777 7.57601 8.51819 8.69343 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045233 B = 0.008007 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.868007 B = 3495.994973 C = 3683.407166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.541 3.459 10 O -0.631 6.631 11 N -0.745 5.745 12 C 0.155 3.845 13 H 0.044 0.956 14 C -0.126 4.126 15 C -0.109 4.109 16 C -0.136 4.136 17 C 0.110 3.890 18 H 0.053 0.947 19 O -0.579 6.579 20 C -0.108 4.108 21 H 0.274 0.726 22 H 0.391 0.609 23 H 0.081 0.919 24 H 0.027 0.973 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.395 0.605 30 H 0.061 0.939 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.795 -9.727 -4.427 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.612 4.612 8 H 0.103 0.897 9 C 0.345 3.655 10 O -0.519 6.519 11 N -0.400 5.400 12 C 0.049 3.951 13 H 0.062 0.938 14 C -0.165 4.165 15 C -0.147 4.147 16 C -0.173 4.173 17 C 0.051 3.949 18 H 0.071 0.929 19 O -0.388 6.388 20 C -0.146 4.146 21 H 0.084 0.916 22 H 0.225 0.775 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.245 0.755 30 H 0.080 0.920 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.262 -9.752 -4.000 13.393 hybrid contribution 0.610 0.957 -0.269 1.167 sum 8.872 -8.795 -4.270 13.202 Atomic orbital electron populations 1.70197 1.09529 1.28843 1.36619 1.26959 0.95484 1.04923 0.91242 0.85032 0.78958 0.75293 0.79154 1.18783 1.19821 1.17147 1.21431 0.95121 0.90454 1.54234 0.89657 1.18555 0.86765 0.84292 0.75907 1.90549 1.16219 1.87496 1.57614 1.45900 1.08886 1.05345 1.79862 1.20548 0.94727 0.83992 0.95805 0.93778 1.21874 0.98340 1.00788 0.95516 1.21366 0.95369 0.98709 0.99220 1.22168 1.00826 0.98830 0.95505 1.21643 0.90818 0.89312 0.93131 0.92930 1.86459 1.35842 1.53362 1.63102 1.21627 0.95478 0.97976 0.99531 0.91648 0.77478 0.90071 0.95393 0.90739 0.93082 0.90504 0.89417 0.75520 0.91973 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.92 11.85 21.84 0.26 -50.66 16 2 C 0.03 1.62 5.49 85.30 0.47 2.09 16 3 Si 1.00 41.25 29.56 68.60 2.03 43.28 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.58 -32.89 9.53 24.83 0.24 -32.65 16 8 H 0.09 4.38 7.85 -2.91 -0.02 4.35 16 9 C 0.54 31.56 7.71 86.36 0.67 32.23 16 10 O -0.63 -42.69 14.71 -4.34 -0.06 -42.76 16 11 N -0.75 -33.48 4.23 -446.82 -1.89 -35.37 16 12 C 0.16 6.05 2.78 44.99 0.13 6.17 16 13 H 0.04 2.03 7.58 -2.39 -0.02 2.01 16 14 C -0.13 -4.45 5.60 30.59 0.17 -4.28 16 15 C -0.11 -3.07 5.76 30.59 0.18 -2.89 16 16 C -0.14 -2.94 5.55 30.60 0.17 -2.77 16 17 C 0.11 2.73 3.30 30.60 0.10 2.83 16 18 H 0.05 1.36 6.51 -2.39 -0.02 1.35 16 19 O -0.58 -12.87 13.32 -148.98 -1.98 -14.85 16 20 C -0.11 -3.26 5.26 30.59 0.16 -3.10 16 21 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 22 H 0.39 15.35 6.85 -92.71 -0.63 14.71 16 23 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.05 1.63 7.60 -2.39 -0.02 1.61 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.39 4.97 9.08 -74.05 -0.67 4.30 16 30 H 0.06 1.97 8.14 -2.38 -0.02 1.96 16 31 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -76.28 256.73 0.46 -75.82 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.17 Total: 26.90 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 2.28 Total: -2.36 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.63 Total: -86.03 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -2.05 Total: -57.61 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -76.28 0.46 -75.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306200336.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.877 kcal (2) G-P(sol) polarization free energy of solvation -76.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds