Wall clock time and date at job start Mon Mar 30 2020 02:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86808 * 119.99901 * 2 1 4 4 H 1.48495 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46841 * 299.99933 * 3 2 1 6 6 H 1.48500 * 109.47041 * 59.99930 * 3 2 1 7 7 C 1.38947 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99656 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00121 * 179.97438 * 9 7 2 11 11 O 1.21284 * 119.99847 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99986 * 179.97438 * 10 9 7 13 13 H 1.09003 * 108.86642 * 61.28546 * 12 10 9 14 14 C 1.46284 * 108.96066 * 180.02562 * 12 10 9 15 15 C 1.54205 * 112.06494 * 181.56683 * 14 12 10 16 16 C 1.50416 * 108.89128 * 282.13280 * 15 14 12 17 17 O 1.44333 * 112.69350 * 92.41347 * 16 15 14 18 18 C 1.44183 * 117.02792 * 318.69636 * 17 16 15 19 19 C 1.50417 * 112.77283 * 318.39326 * 18 17 16 20 20 H 0.96993 * 120.00217 * 359.97438 * 1 2 3 21 21 H 0.97001 * 119.99787 * 0.02562 * 9 7 2 22 22 H 1.08998 * 108.96016 * 60.89935 * 14 12 10 23 23 H 1.09006 * 108.89470 * 302.18523 * 14 12 10 24 24 H 1.09002 * 109.58872 * 41.99289 * 15 14 12 25 25 H 1.08996 * 109.58685 * 162.27508 * 15 14 12 26 26 H 1.09009 * 108.81794 * 213.49795 * 16 15 14 27 27 H 1.08996 * 108.82246 * 331.79266 * 16 15 14 28 28 H 1.09001 * 108.82543 * 197.54590 * 18 17 16 29 29 H 1.09007 * 108.73897 * 79.18206 * 18 17 16 30 30 H 1.08994 * 109.59176 * 332.78873 * 19 18 17 31 31 H 1.09004 * 109.70131 * 212.43294 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2439 -4.8630 0.0034 13 1 0.6375 -4.9211 -0.9005 14 6 2.2044 -5.9663 0.0036 15 6 1.5072 -7.3412 -0.0337 16 6 0.9927 -7.6639 1.3424 17 8 -0.3723 -7.2388 1.5403 18 6 -0.7412 -5.9508 1.0077 19 6 0.3146 -4.9034 1.2331 20 1 -0.4850 0.8400 0.0004 21 1 0.3534 -2.3906 0.0016 22 1 2.8158 -5.9034 0.9038 23 1 2.8498 -5.8726 -0.8698 24 1 0.6750 -7.3101 -0.7370 25 1 2.2205 -8.1042 -0.3453 26 1 1.0561 -8.7410 1.4979 27 1 1.6235 -7.1667 2.0792 28 1 -1.6665 -5.6254 1.4833 29 1 -0.9137 -6.0513 -0.0639 30 1 0.8944 -5.1542 2.1213 31 1 -0.1565 -3.9296 1.3674 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306252420.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:43 Heat of formation + Delta-G solvation = -120.637875 kcal Electronic energy + Delta-G solvation = -14632.390769 eV Core-core repulsion = 12105.294836 eV Total energy + Delta-G solvation = -2527.095933 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.18714 -39.27969 -36.20577 -35.42383 -33.66910 -32.85933 -28.75814 -27.35700 -25.99991 -22.69341 -21.39718 -20.72722 -19.96788 -18.11741 -17.58197 -17.06317 -16.39330 -16.19683 -15.81732 -15.03261 -14.68828 -14.59421 -14.18125 -13.92153 -13.54566 -13.29414 -12.95808 -12.49310 -12.35883 -12.16671 -12.14052 -11.81499 -11.67999 -11.54586 -11.34935 -10.41768 -10.27731 -10.05283 -8.50612 -5.99914 1.33966 1.39912 1.54064 1.97900 2.27275 2.86165 3.11004 3.15970 3.73280 3.81790 3.96047 4.04562 4.13323 4.40038 4.48070 4.56235 4.66145 4.75162 4.88195 4.91127 5.09703 5.14633 5.19708 5.26463 5.37898 5.43404 5.96165 6.31614 6.54314 7.07709 7.50940 8.06010 8.66800 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057238 B = 0.007463 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.064748 B = 3750.773586 C = 4105.364462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.567 5.567 10 C 0.436 3.564 11 O -0.638 6.638 12 C -0.086 4.086 13 H 0.099 0.901 14 C -0.099 4.099 15 C -0.140 4.140 16 C 0.059 3.941 17 O -0.410 6.410 18 C 0.070 3.930 19 C -0.138 4.138 20 H 0.279 0.721 21 H 0.397 0.603 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.042 0.958 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 -11.219 0.760 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.203 5.203 10 C 0.224 3.776 11 O -0.526 6.526 12 C -0.107 4.107 13 H 0.117 0.883 14 C -0.137 4.137 15 C -0.178 4.178 16 C -0.017 4.017 17 O -0.331 6.331 18 C -0.006 4.006 19 C -0.176 4.176 20 H 0.089 0.911 21 H 0.232 0.768 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.118 0.882 26 H 0.127 0.873 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.647 -11.154 0.849 11.496 hybrid contribution 0.306 1.346 -0.156 1.389 sum -2.340 -9.809 0.692 10.108 Atomic orbital electron populations 1.69665 1.06802 1.29402 1.49899 1.26050 0.96565 1.02408 0.96017 0.84873 0.77970 0.77022 0.78475 1.19918 1.19408 1.19435 1.19739 0.92723 0.84189 1.50276 0.90464 1.41971 1.09361 1.04698 1.64220 1.21034 0.88010 0.86473 0.82088 1.90470 1.16196 1.88235 1.57724 1.20289 0.97804 0.91945 1.00669 0.88290 1.20389 0.97232 0.93726 1.02362 1.21887 1.01540 0.96089 0.98263 1.22474 0.82436 1.00851 0.95945 1.88207 1.29313 1.35202 1.80354 1.22317 0.96854 0.81730 0.99683 1.21915 0.97646 1.01016 0.97035 0.91133 0.76828 0.93076 0.92617 0.90063 0.88153 0.87258 0.94009 0.87850 0.91761 0.91345 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.31 13.05 21.66 0.28 -49.03 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.46 5.01 -306.98 -1.54 -30.99 16 10 C 0.44 21.20 7.09 87.66 0.62 21.83 16 11 O -0.64 -36.24 15.38 -3.04 -0.05 -36.28 16 12 C -0.09 -3.00 2.08 -13.20 -0.03 -3.03 16 13 H 0.10 3.12 7.56 -2.39 -0.02 3.10 16 14 C -0.10 -3.14 3.90 28.93 0.11 -3.03 16 15 C -0.14 -3.15 5.60 30.17 0.17 -2.98 16 16 C 0.06 1.33 6.28 71.15 0.45 1.78 16 17 O -0.41 -10.75 10.88 -148.98 -1.62 -12.37 16 18 C 0.07 1.76 6.27 71.15 0.45 2.20 16 19 C -0.14 -4.27 4.93 30.16 0.15 -4.12 16 20 H 0.28 13.96 8.31 -92.71 -0.77 13.18 16 21 H 0.40 19.52 7.07 -92.71 -0.66 18.86 16 22 H 0.05 1.78 7.46 -2.39 -0.02 1.76 16 23 H 0.06 1.91 7.93 -2.38 -0.02 1.89 16 24 H 0.08 1.73 7.15 -2.39 -0.02 1.71 16 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.04 1.03 6.69 -2.39 -0.02 1.02 16 28 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.06 1.46 6.67 -2.38 -0.02 1.45 16 30 H 0.07 2.21 7.16 -2.39 -0.02 2.20 16 31 H 0.07 2.50 6.99 -2.38 -0.02 2.48 16 Total: -1.00 -66.45 251.08 2.78 -63.67 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.48 Total: 26.18 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 3.20 Total: -6.16 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -1.26 Total: -80.02 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -1.67 Total: -48.66 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -66.45 2.78 -63.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306252420.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.969 kcal (2) G-P(sol) polarization free energy of solvation -66.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds