Wall clock time and date at job start Mon Mar 30 2020 02:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99888 * 2 1 4 4 H 1.48499 * 109.47136 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47058 * 120.00109 * 3 2 1 6 6 H 1.48497 * 109.47498 * 240.00285 * 3 2 1 7 7 C 1.37874 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00402 * 185.09571 * 7 2 1 9 9 C 1.50706 * 119.99767 * 5.10002 * 7 2 1 10 10 C 1.52995 * 115.54917 * 278.86564 * 9 7 2 11 11 N 1.46900 * 109.47149 * 294.57973 * 10 9 7 12 12 C 1.48125 * 111.00325 * 193.21421 * 11 10 9 13 13 C 1.55109 * 103.11243 * 215.74214 * 12 11 10 14 14 H 1.09000 * 111.06219 * 277.05442 * 13 12 11 15 15 O 1.42902 * 111.06074 * 153.05039 * 13 12 11 16 16 C 1.54960 * 101.26917 * 35.05404 * 13 12 11 17 17 O 1.43879 * 104.25102 * 324.01846 * 16 13 12 18 18 C 1.52999 * 117.49790 * 133.15655 * 9 7 2 19 19 C 1.53000 * 60.00194 * 252.51170 * 18 9 7 20 20 H 0.97000 * 120.00091 * 354.98664 * 1 2 3 21 21 H 1.09002 * 109.47196 * 54.58141 * 10 9 7 22 22 H 1.09005 * 109.47016 * 174.58097 * 10 9 7 23 23 H 1.09007 * 110.68874 * 334.14659 * 12 11 10 24 24 H 1.09000 * 110.69075 * 97.33463 * 12 11 10 25 25 H 0.96702 * 113.99785 * 186.66026 * 15 13 12 26 26 H 1.09002 * 110.47394 * 205.32839 * 16 13 12 27 27 H 1.08998 * 110.47898 * 82.70964 * 16 13 12 28 28 H 1.09002 * 117.49905 * 359.97438 * 18 9 7 29 29 H 1.09000 * 117.50107 * 145.02291 * 18 9 7 30 30 H 1.09000 * 117.49789 * 252.51175 * 19 18 9 31 31 H 1.08997 * 117.52029 * 107.47704 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0825 9 6 1.2555 -2.4965 -0.1171 10 6 0.6387 -3.0215 1.1808 11 7 1.7083 -3.3643 2.1277 12 6 1.1804 -4.1612 3.2591 13 6 2.0197 -3.6609 4.4638 14 1 2.9816 -4.1715 4.5100 15 8 1.3005 -3.8131 5.6892 16 6 2.2003 -2.1640 4.1062 17 8 2.3341 -2.1557 2.6736 18 6 1.7830 -3.5277 -1.1168 19 6 0.4944 -2.7597 -1.4181 20 1 -0.4850 0.8368 0.0734 21 1 0.0002 -2.2529 1.6165 22 1 0.0440 -3.9097 0.9673 23 1 0.1216 -3.9543 3.4151 24 1 1.3450 -5.2254 3.0905 25 1 1.7420 -3.4218 6.4555 26 1 3.0999 -1.7657 4.5754 27 1 1.3246 -1.5909 4.4106 28 1 2.6715 -3.2638 -1.6905 29 1 1.6907 -4.5805 -0.8499 30 1 -0.4456 -3.3073 -1.3493 31 1 0.5351 -1.9906 -2.1893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306281375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:15 Heat of formation + Delta-G solvation = -9.648870 kcal Electronic energy + Delta-G solvation = -14868.652169 eV Core-core repulsion = 12346.369080 eV Total energy + Delta-G solvation = -2522.283089 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.75530 -36.61954 -35.56453 -32.04971 -31.69702 -29.56686 -25.96961 -25.06514 -22.31882 -21.38257 -20.90125 -18.92389 -17.51238 -16.22739 -15.82220 -15.16729 -14.49686 -14.22857 -13.87743 -13.61805 -13.08027 -12.77551 -12.64762 -11.94426 -11.47942 -11.39885 -10.94972 -10.81952 -10.71667 -10.37185 -10.10191 -10.07920 -9.70299 -9.36447 -8.68377 -8.33919 -8.13570 -7.71591 -5.87426 -3.87792 3.40699 3.43627 3.48197 3.58208 3.95196 4.54868 4.80487 4.86877 5.12641 5.36390 5.44233 5.59235 5.71505 5.84185 5.90799 6.06214 6.21264 6.40519 6.53844 6.71394 6.76077 6.89469 7.17236 7.36159 7.47264 7.52667 7.63374 7.81552 8.07056 8.62706 9.11175 9.74666 11.22182 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.011668 C = 0.009259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.292874 B = 2399.240670 C = 3023.423646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.291 1.291 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.461 4.461 8 H 0.060 0.940 9 C 0.060 3.940 10 C 0.069 3.931 11 N -0.314 5.314 12 C 0.001 3.999 13 C 0.076 3.924 14 H 0.081 0.919 15 O -0.561 6.561 16 C -0.013 4.013 17 O -0.191 6.191 18 C -0.202 4.202 19 C -0.165 4.165 20 H 0.256 0.744 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.380 0.620 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 -6.163 7.957 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.217 1.217 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.499 4.499 8 H 0.078 0.922 9 C 0.059 3.941 10 C -0.059 4.059 11 N -0.081 5.081 12 C -0.128 4.128 13 C 0.016 3.984 14 H 0.099 0.901 15 O -0.366 6.366 16 C -0.092 4.092 17 O -0.196 6.196 18 C -0.239 4.239 19 C -0.203 4.203 20 H 0.066 0.934 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.227 0.773 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.119 -6.430 7.087 9.802 hybrid contribution -0.071 1.592 1.047 1.907 sum 2.048 -4.838 8.134 9.683 Atomic orbital electron populations 1.69960 1.05803 1.26373 1.50901 1.24917 0.94716 0.98633 0.95091 0.86735 0.79626 0.83487 0.78575 1.21682 1.20342 1.20402 1.20298 0.92771 0.88210 1.48575 0.92200 1.18586 0.97040 0.93502 0.84985 1.22319 0.91184 0.98156 0.94258 1.70589 1.30267 1.00806 1.06390 1.23804 0.98672 1.00106 0.90176 1.23725 0.94985 0.95113 0.84566 0.90143 1.86473 1.50758 1.81739 1.17624 1.24294 1.01798 0.95882 0.87263 1.92042 1.75084 1.37894 1.14536 1.22882 0.97564 0.95733 1.07713 1.22592 0.92756 1.01829 1.03152 0.93382 0.91978 0.92585 0.91974 0.87928 0.77266 0.89602 0.92332 0.90620 0.91765 0.92165 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.06 55.43 0.72 -25.14 16 2 C 0.07 1.90 5.42 -17.82 -0.10 1.80 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.46 -12.92 7.38 -34.44 -0.25 -13.18 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.06 1.51 1.50 -155.66 -0.23 1.27 16 10 C 0.07 1.59 5.00 -3.83 -0.02 1.58 16 11 N -0.31 -6.61 5.83 -111.62 -0.65 -7.26 16 12 C 0.00 0.02 6.59 -2.03 -0.01 0.01 16 13 C 0.08 1.12 4.54 -24.58 -0.11 1.00 16 14 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 15 O -0.56 -7.26 13.48 -35.23 -0.47 -7.73 16 16 C -0.01 -0.21 7.64 38.19 0.29 0.08 16 17 O -0.19 -4.33 10.48 -14.11 -0.15 -4.48 16 18 C -0.20 -4.56 9.96 -26.73 -0.27 -4.82 16 19 C -0.17 -3.95 9.62 -26.73 -0.26 -4.21 16 20 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 21 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 22 H 0.06 1.17 7.99 -51.93 -0.41 0.76 16 23 H 0.06 1.07 7.81 -51.93 -0.41 0.67 16 24 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 25 H 0.38 3.04 9.11 45.56 0.42 3.45 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 265.69 15.07 4.00 4.00 Total: -1.00 -31.39 265.69 -6.28 -37.67 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.76 Total: 2.39 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.96 Total: -16.46 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.07 Total: -32.40 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.62 Total: -12.22 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.39 -6.28 -37.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306281375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.024 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds